Gentoo Archives: gentoo-commits

From: David Seifert <soap@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/phylip/
Date: Tue, 27 Oct 2020 20:56:42
Message-Id: 1603832178.1f16dff22517a1d448e3d40e44621f2dd62c5c10.soap@gentoo
1 commit: 1f16dff22517a1d448e3d40e44621f2dd62c5c10
2 Author: David Seifert <soap <AT> gentoo <DOT> org>
3 AuthorDate: Tue Oct 27 20:56:18 2020 +0000
4 Commit: David Seifert <soap <AT> gentoo <DOT> org>
5 CommitDate: Tue Oct 27 20:56:18 2020 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1f16dff2
7
8 sci-biology/phylip: Remove old
9
10 Closes: https://bugs.gentoo.org/707150
11 Closes: https://bugs.gentoo.org/727982
12 Package-Manager: Portage-3.0.8, Repoman-3.0.2
13 Signed-off-by: David Seifert <soap <AT> gentoo.org>
14
15 sci-biology/phylip/Manifest | 2 --
16 sci-biology/phylip/phylip-3.69-r1.ebuild | 51 ----------------------------
17 sci-biology/phylip/phylip-3.696-r1.ebuild | 54 ------------------------------
18 sci-biology/phylip/phylip-3.696-r2.ebuild | 55 -------------------------------
19 4 files changed, 162 deletions(-)
20
21 diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
22 index 2f29996a668..444e3d45e35 100644
23 --- a/sci-biology/phylip/Manifest
24 +++ b/sci-biology/phylip/Manifest
25 @@ -1,3 +1 @@
26 -DIST phylip-3.69.tar.gz 1511935 BLAKE2B 76aa5a79d2553c6f269c011f633d1101ee4d85ac398a36dd463e5605d90833ecb1e5f6c21edba3e142e2d4ab5ef034fa739e52e0ab3f941a7987915ae352be0b SHA512 e36d12bfe597896b4298c1d0e3b0b7bd783573dc03e861b9472d8284391b2339cb3fb58eb6580298724bbd516127b68925815455514f939da9272fcfed7e229d
27 -DIST phylip-3.696.tar.gz 3955721 BLAKE2B dc75fc442eb63e44bc2e68e5dc97b3ff8f741bfa53740ed57ca114b53dcb71db9baeb9a96c3e693f7fae92afbaa71c7b5acfb39e7770bacb6aafa8c33b355be6 SHA512 711a9a34be72b0f63c746733cd1384f091b7cc597dbd9a40c130e074efbf0a0ecc30e5a6b3452bb73dc69cddbdae2fc07d1c0a68f0be207471eab73ab876c6be
28 DIST phylip-3.698.zip 9675991 BLAKE2B 8d020cf17b3245b9827af4bdd1d17167c3e1a41ae805766c4b72f09de107775314a2a296c00f84f928487403cc02741fd46ae73585d0dba143f4b926777e9add SHA512 7f822dabd1ffdb6a689e0c308f5a3ae129bd86e305086a18c0c755ac3c6ca28a4337d52ced76b280706926370e23f19f304851ef82e32833d1945ed277f7d70d
29
30 diff --git a/sci-biology/phylip/phylip-3.69-r1.ebuild b/sci-biology/phylip/phylip-3.69-r1.ebuild
31 deleted file mode 100644
32 index e54c75d9b35..00000000000
33 --- a/sci-biology/phylip/phylip-3.69-r1.ebuild
34 +++ /dev/null
35 @@ -1,51 +0,0 @@
36 -# Copyright 1999-2019 Gentoo Authors
37 -# Distributed under the terms of the GNU General Public License v2
38 -
39 -EAPI=5
40 -
41 -inherit toolchain-funcs
42 -
43 -DESCRIPTION=" The PHYLogeny Inference Package"
44 -HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
45 -SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
46 -
47 -SLOT="0"
48 -LICENSE="free-noncomm"
49 -IUSE=""
50 -KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos"
51 -
52 -RDEPEND="x11-libs/libXaw"
53 -DEPEND="${RDEPEND}
54 - x11-base/xorg-proto"
55 -
56 -S="${WORKDIR}/${P}/src"
57 -
58 -src_prepare() {
59 - sed \
60 - -e "s/CFLAGS = -O3 -fomit-frame-pointer/CFLAGS = ${CFLAGS}/" \
61 - -e "s/CC = cc/CC = $(tc-getCC)/" \
62 - -e "s/DC = cc/DC = $(tc-getCC)/" \
63 - -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
64 - -i Makefile || die "Patching Makefile failed."
65 - mkdir ../fonts || die
66 -}
67 -
68 -src_compile() {
69 - emake -j1 all put
70 -}
71 -
72 -src_install() {
73 - cd "${WORKDIR}/${P}" || die
74 -
75 - mv exe/font* fonts || die "Font move failed."
76 - mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
77 -
78 - dobin exe/*
79 -
80 - dodoc "${FILESDIR}"/README.Gentoo
81 -
82 - dohtml -r phylip.html doc
83 -
84 - insinto /usr/share/${PN}/
85 - doins -r fonts
86 -}
87
88 diff --git a/sci-biology/phylip/phylip-3.696-r1.ebuild b/sci-biology/phylip/phylip-3.696-r1.ebuild
89 deleted file mode 100644
90 index 85150acaf9c..00000000000
91 --- a/sci-biology/phylip/phylip-3.696-r1.ebuild
92 +++ /dev/null
93 @@ -1,54 +0,0 @@
94 -# Copyright 1999-2018 Gentoo Foundation
95 -# Distributed under the terms of the GNU General Public License v2
96 -
97 -EAPI=5
98 -
99 -inherit toolchain-funcs
100 -
101 -DESCRIPTION=" The PHYLogeny Inference Package"
102 -HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
103 -SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
104 -
105 -SLOT="0"
106 -LICENSE="BSD-2"
107 -IUSE=""
108 -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
109 -
110 -RDEPEND="x11-libs/libXaw"
111 -DEPEND="${RDEPEND}
112 - x11-base/xorg-proto"
113 -
114 -S="${WORKDIR}/${P}/src"
115 -
116 -src_prepare() {
117 - mv Makefile.unx Makefile || die
118 - sed \
119 - -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
120 - -i Makefile || die "Patching Makefile failed."
121 - mkdir ../fonts || die
122 -}
123 -
124 -src_compile() {
125 - emake -j1 \
126 - CC="$(tc-getCC)" \
127 - DC="$(tc-getCC)" \
128 - CFLAGS="${CFLAGS} -Wno-unused-result" \
129 - all put
130 -}
131 -
132 -src_install() {
133 - cd "${WORKDIR}/${P}" || die
134 -
135 - mv exe/font* fonts || die "Font move failed."
136 - mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
137 -
138 - dolib.so exe/*so && rm exe/*so
139 - dobin exe/*
140 -
141 - dodoc "${FILESDIR}"/README.Gentoo
142 -
143 - dohtml -r phylip.html doc
144 -
145 - insinto /usr/share/${PN}/
146 - doins -r fonts
147 -}
148
149 diff --git a/sci-biology/phylip/phylip-3.696-r2.ebuild b/sci-biology/phylip/phylip-3.696-r2.ebuild
150 deleted file mode 100644
151 index 66391e0e662..00000000000
152 --- a/sci-biology/phylip/phylip-3.696-r2.ebuild
153 +++ /dev/null
154 @@ -1,55 +0,0 @@
155 -# Copyright 1999-2018 Gentoo Foundation
156 -# Distributed under the terms of the GNU General Public License v2
157 -
158 -EAPI=5
159 -
160 -inherit toolchain-funcs
161 -
162 -DESCRIPTION=" The PHYLogeny Inference Package"
163 -HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
164 -SRC_URI="http://evolution.gs.washington.edu/${PN}/download/${P}.tar.gz"
165 -
166 -SLOT="0"
167 -LICENSE="BSD-2"
168 -IUSE=""
169 -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
170 -# 'mix' tool collides with dev-lang/elixir, bug #537514
171 -RDEPEND="x11-libs/libXaw
172 - !!dev-lang/elixir"
173 -DEPEND="${RDEPEND}
174 - x11-base/xorg-proto"
175 -
176 -S="${WORKDIR}/${P}/src"
177 -
178 -src_prepare() {
179 - mv Makefile.unx Makefile || die
180 - sed \
181 - -e "/ -o /s:\(\$(CC)\):\1 ${LDFLAGS}:g" \
182 - -i Makefile || die "Patching Makefile failed."
183 - mkdir ../fonts || die
184 -}
185 -
186 -src_compile() {
187 - emake -j1 \
188 - CC="$(tc-getCC)" \
189 - DC="$(tc-getCC)" \
190 - CFLAGS="${CFLAGS} -Wno-unused-result" \
191 - all put
192 -}
193 -
194 -src_install() {
195 - cd "${WORKDIR}/${P}" || die
196 -
197 - mv exe/font* fonts || die "Font move failed."
198 - mv exe/factor exe/factor-${PN} || die "Renaming factor failed."
199 -
200 - dolib.so exe/*so && rm exe/*so
201 - dobin exe/*
202 -
203 - dodoc "${FILESDIR}"/README.Gentoo
204 -
205 - dohtml -r phylip.html doc
206 -
207 - insinto /usr/share/${PN}/
208 - doins -r fonts
209 -}