Gentoo Archives: gentoo-commits

From: "Michał Górny" <mgorny@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/
Date: Sat, 03 Jul 2021 08:16:37
Message-Id: 1625300188.362fd3c89dc7ae56bfdc84fbda2faba9da43a0a1.mgorny@gentoo
1 commit: 362fd3c89dc7ae56bfdc84fbda2faba9da43a0a1
2 Author: Michał Górny <mgorny <AT> gentoo <DOT> org>
3 AuthorDate: Sat Jul 3 06:43:39 2021 +0000
4 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org>
5 CommitDate: Sat Jul 3 08:16:28 2021 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=362fd3c8
7
8 dev-python/pandas: Bump to 1.3.0
9
10 Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>
11
12 dev-python/pandas/Manifest | 1 +
13 dev-python/pandas/pandas-1.3.0.ebuild | 192 ++++++++++++++++++++++++++++++++++
14 2 files changed, 193 insertions(+)
15
16 diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
17 index 8b790820335..4d334a762ed 100644
18 --- a/dev-python/pandas/Manifest
19 +++ b/dev-python/pandas/Manifest
20 @@ -1,3 +1,4 @@
21 DIST pandas-1.2.3.tar.gz 5466356 BLAKE2B f392321915128769814b3a8b7673cd7b00c9c292f4cb8d8b2e8537f7cc513f92cb6b8ff74dffe3b167987e8fa387738264dbebfdf4019f9cd7afd4f78234212a SHA512 3108424253aa143a85ef166091829bbd8c9b6446b516f37252742146d184f722e1fb8af5b4d04937362a298068019a91392e40c818126df6a7459bab7f3077cb
22 DIST pandas-1.2.4.tar.gz 5469105 BLAKE2B 7f39e3ca67f5997c0668b0c2e9792869963adcd0347a3983188a992794ad58ccba82105b4dc3315cc17d79104f7fea7a273c218967eb51b1ea1514e87aeebb66 SHA512 79e7a38b8edad52b70eb81ba821141b928c782009d59c50076e7d1e7c015078d333c0c80bda7ba720f4ccb221a0ba93a02885fe6a573567ee37ffae14ee9b2c3
23 DIST pandas-1.2.5.tar.gz 5470907 BLAKE2B 2c5e0cb0849aa23ee8640528a3e29a579cc051543731e44c9be41fb989c85f1b2b18bc028e97c9b200f9894e4c3ac8af6a2100586e41f6d8a165a4c4679fd649 SHA512 c8bc2ca7ff8ca1a4877ccda67aaf49c103525d0f511636f93e1db3720d9a1717aacde0a5e3f107f8f620b59f0269d9e5c9515fbef46da4e87fca678d7acda990
24 +DIST pandas-1.3.0.tar.gz 4721119 BLAKE2B f09eedd848686597a755da929683e841be61cce4385fa1e4616a328e267dcd4fb44bc9ad5da56402a52da6fb3b12f84795da10cd20df7fd0b349e749dd814bc3 SHA512 67145114091901d8e2a376392d8890372675a1b5831de310715a6e6f7f4509dd8cf1a4b30cab3314f849b6c709270a246524b958b686f9e7fbe2489ce5b650a0
25
26 diff --git a/dev-python/pandas/pandas-1.3.0.ebuild b/dev-python/pandas/pandas-1.3.0.ebuild
27 new file mode 100644
28 index 00000000000..bd75ba8b21c
29 --- /dev/null
30 +++ b/dev-python/pandas/pandas-1.3.0.ebuild
31 @@ -0,0 +1,192 @@
32 +# Copyright 1999-2021 Gentoo Authors
33 +# Distributed under the terms of the GNU General Public License v2
34 +
35 +EAPI=7
36 +
37 +PYTHON_COMPAT=( python3_{8..9} )
38 +PYTHON_REQ_USE="threads(+)"
39 +
40 +VIRTUALX_REQUIRED="manual"
41 +
42 +inherit distutils-r1 flag-o-matic multiprocessing optfeature virtualx
43 +
44 +DESCRIPTION="Powerful data structures for data analysis and statistics"
45 +HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
46 +SRC_URI="
47 + https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz"
48 +S="${WORKDIR}/${P/_/}"
49 +
50 +SLOT="0"
51 +LICENSE="BSD"
52 +KEYWORDS="~amd64 ~arm ~arm64 ~x86"
53 +IUSE="doc full-support minimal test X"
54 +RESTRICT="!test? ( test )"
55 +
56 +RECOMMENDED_DEPEND="
57 + >=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
58 + >=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
59 +"
60 +
61 +# TODO: add pandas-gbq to the tree
62 +OPTIONAL_DEPEND="
63 + dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
64 + dev-python/blosc[${PYTHON_USEDEP}]
65 + || (
66 + dev-python/html5lib[${PYTHON_USEDEP}]
67 + dev-python/lxml[${PYTHON_USEDEP}]
68 + )
69 + dev-python/jinja[${PYTHON_USEDEP}]
70 + dev-python/matplotlib[${PYTHON_USEDEP}]
71 + || (
72 + dev-python/openpyxl[${PYTHON_USEDEP}]
73 + dev-python/xlsxwriter[${PYTHON_USEDEP}]
74 + )
75 + >=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
76 + dev-python/statsmodels[${PYTHON_USEDEP}]
77 + >=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
78 + >=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
79 + >=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
80 + >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
81 + >=dev-python/scipy-1.1[${PYTHON_USEDEP}]
82 + X? (
83 + || (
84 + dev-python/PyQt5[${PYTHON_USEDEP}]
85 + x11-misc/xclip
86 + x11-misc/xsel
87 + )
88 + )
89 +"
90 +COMMON_DEPEND="
91 + >=dev-python/numpy-1.17.3[${PYTHON_USEDEP}]
92 + >=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
93 + >=dev-python/pytz-2017.3[${PYTHON_USEDEP}]
94 +"
95 +DEPEND="${COMMON_DEPEND}
96 + >=dev-python/cython-0.29.21[${PYTHON_USEDEP}]
97 + doc? (
98 + ${VIRTUALX_DEPEND}
99 + app-text/pandoc
100 + dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
101 + dev-python/html5lib[${PYTHON_USEDEP}]
102 + dev-python/ipython[${PYTHON_USEDEP}]
103 + dev-python/lxml[${PYTHON_USEDEP}]
104 + dev-python/matplotlib[${PYTHON_USEDEP}]
105 + dev-python/nbsphinx[${PYTHON_USEDEP}]
106 + >=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
107 + >=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
108 + >=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
109 + dev-python/pytz[${PYTHON_USEDEP}]
110 + dev-python/rpy[${PYTHON_USEDEP}]
111 + dev-python/sphinx[${PYTHON_USEDEP}]
112 + dev-python/xlrd[${PYTHON_USEDEP}]
113 + dev-python/xlwt[${PYTHON_USEDEP}]
114 + dev-python/scipy[${PYTHON_USEDEP}]
115 + x11-misc/xclip
116 + )
117 + test? (
118 + ${VIRTUALX_DEPEND}
119 + ${RECOMMENDED_DEPEND}
120 + ${OPTIONAL_DEPEND}
121 + dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
122 + dev-python/hypothesis[${PYTHON_USEDEP}]
123 + dev-python/openpyxl[${PYTHON_USEDEP}]
124 + dev-python/pymysql[${PYTHON_USEDEP}]
125 + >=dev-python/pytest-6[${PYTHON_USEDEP}]
126 + dev-python/pytest-xdist[${PYTHON_USEDEP}]
127 + dev-python/psycopg:2[${PYTHON_USEDEP}]
128 + dev-python/xlsxwriter[${PYTHON_USEDEP}]
129 + x11-misc/xclip
130 + x11-misc/xsel
131 + )
132 +"
133 +# dev-python/statsmodels invokes a circular dep
134 +# hence rm from doc? ( ), again
135 +RDEPEND="${COMMON_DEPEND}
136 + !minimal? ( ${RECOMMENDED_DEPEND} )
137 + full-support? ( ${OPTIONAL_DEPEND} )
138 +"
139 +
140 +python_prepare_all() {
141 + # Prevent un-needed download during build
142 + sed -e "/^ 'sphinx.ext.intersphinx',/d" \
143 + -i doc/source/conf.py || die
144 +
145 + # requires package installed
146 + sed -e '/extra_compile_args =/s:"-Werror"::' \
147 + -i setup.py || die
148 +
149 + distutils-r1_python_prepare_all
150 +}
151 +
152 +python_compile() {
153 + distutils-r1_python_compile -j1
154 +}
155 +
156 +python_compile_all() {
157 + # To build docs the need be located in $BUILD_DIR,
158 + # else PYTHONPATH points to unusable modules.
159 + if use doc; then
160 + cd "${BUILD_DIR}"/lib || die
161 + cp -ar "${S}"/doc . && cd doc || die
162 + LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
163 + fi
164 +}
165 +
166 +python_test() {
167 + local deselect=(
168 + # test for rounding errors, fails if we have better precision
169 + # e.g. on amd64 with FMA or on arm64
170 + # https://github.com/pandas-dev/pandas/issues/38921
171 + pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
172 +
173 + # weird issue, doesn't seem very important
174 + 'pandas/tests/base/test_misc.py::test_memory_usage[series-with-empty-index]'
175 +
176 + # old psycopg2 API
177 + pandas/tests/tools/test_to_datetime.py::TestToDatetime::test_to_datetime_tz_psycopg2
178 +
179 + # Internet
180 + pandas/tests/io/xml/test_xml.py::test_wrong_url
181 +
182 + # TODO: some data path problems?
183 + pandas/tests/io/test_fsspec.py::test_read_csv
184 + pandas/tests/io/test_fsspec.py::test_markdown_options
185 + )
186 +
187 + local -x LC_ALL=C.UTF-8
188 + pushd "${BUILD_DIR}"/lib > /dev/null || die
189 + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
190 + PYTHONPATH=. virtx epytest pandas --skip-slow --skip-network \
191 + ${deselect[@]/#/--deselect } -m "not single" \
192 + -n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")"
193 + find . '(' -name .pytest_cache -o -name .hypothesis ')' \
194 + -exec rm -r {} + || die
195 + popd > /dev/null || die
196 +}
197 +
198 +python_install_all() {
199 + if use doc; then
200 + dodoc -r "${BUILD_DIR}"/lib/doc/build/html
201 + einfo "An initial build of docs is absent of references to statsmodels"
202 + einfo "due to circular dependency. To have them included, emerge"
203 + einfo "statsmodels next and re-emerge pandas with USE doc"
204 + fi
205 +
206 + distutils-r1_python_install_all
207 +}
208 +
209 +pkg_postinst() {
210 + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
211 + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
212 + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup:4 dev-python/html5lib dev-python/lxml
213 + optfeature "for msgpack compression using blosc" dev-python/blosc
214 + optfeature "Template engine for conditional HTML formatting" dev-python/jinja
215 + optfeature "Plotting support" dev-python/matplotlib
216 + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
217 + optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
218 + optfeature "R I/O support" dev-python/rpy
219 + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
220 + optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
221 + optfeature "miscellaneous statistical functions" dev-python/scipy
222 + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
223 +}