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commit: aa8d1629a74fa1d78d505fee76946c82d828e111 |
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Author: Sebastien Fabbro <sfabbro <AT> uvic <DOT> ca> |
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AuthorDate: Fri Jul 6 17:50:07 2012 +0000 |
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Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org> |
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CommitDate: Fri Jul 6 17:50:07 2012 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=aa8d1629 |
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|
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sci-libs/hdf5: in main tree |
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|
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--- |
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sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch | 22 ----- |
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sci-libs/hdf5/files/hdf5-1.8.8-buildsystem.patch | 33 ------- |
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sci-libs/hdf5/files/hdf5-1.8.9-implicits.patch | 55 ----------- |
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sci-libs/hdf5/hdf5-1.8.9_pre14.ebuild | 101 --------------------- |
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sci-libs/hdf5/metadata.xml | 19 ---- |
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5 files changed, 0 insertions(+), 230 deletions(-) |
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|
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diff --git a/sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch b/sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch |
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deleted file mode 100644 |
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index 042d012..0000000 |
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--- a/sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch |
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+++ /dev/null |
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@@ -1,22 +0,0 @@ |
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---- a/perform/pio_engine.c |
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-+++ b/perform/pio_engine.c |
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-@@ -454,7 +454,7 @@ |
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- subdir = (user ? user : login); |
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- |
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- if (subdir) { |
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-- for (i = 0; i < size && prefix[i]; i++) |
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-+ for (i = 0; i < size-1 && prefix[i]; i++) |
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- fullname[i] = prefix[i]; |
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- |
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- fullname[i++] = '/'; |
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---- a/perform/sio_engine.c |
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-+++ b/perform/sio_engine.c |
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-@@ -353,7 +353,7 @@ |
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- subdir = (user ? user : login); |
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- |
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- if (subdir) { |
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-- for (i = 0; i < size && prefix[i]; i++) |
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-+ for (i = 0; i < size-1 && prefix[i]; i++) |
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- fullname[i] = prefix[i]; |
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- |
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- fullname[i++] = '/'; |
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|
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diff --git a/sci-libs/hdf5/files/hdf5-1.8.8-buildsystem.patch b/sci-libs/hdf5/files/hdf5-1.8.8-buildsystem.patch |
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deleted file mode 100644 |
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index 0f85cf5..0000000 |
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--- a/sci-libs/hdf5/files/hdf5-1.8.8-buildsystem.patch |
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+++ /dev/null |
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@@ -1,33 +0,0 @@ |
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-Prevent build system with messing up LD_LIBRARY_PATH |
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- |
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---- a/configure.in |
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-+++ b/configure.in |
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-@@ -2328,8 +2328,6 @@ |
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- dnl |
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- AC_MSG_CHECKING([how to print long long]) |
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- AC_CACHE_VAL([hdf5_cv_printf_ll], |
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--LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $AM_LDFLAGS $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`" |
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--export LD_LIBRARY_PATH |
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- |
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- for hdf5_cv_printf_ll in l ll L q unknown; do |
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- AC_TRY_RUN([ |
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---- a/src/Makefile.am |
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-+++ b/src/Makefile.am |
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-@@ -125,8 +125,6 @@ |
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- # Remove the generated .c file if errors occur unless HDF5_Make_Ignore |
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- # is set to ignore the error. |
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- H5Tinit.c: H5detect$(EXEEXT) |
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-- LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \ |
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-- sed -e 's/-L/:/g' -e 's/ //g'`" \ |
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- $(RUNSERIAL) ./H5detect$(EXEEXT) > $@ || \ |
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- (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ |
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- ($(RM) $@ ; exit 1) |
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-@@ -137,8 +135,6 @@ |
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- # Remove the generated .c file if errors occur unless HDF5_Make_Ignore |
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- # is set to ignore the error. |
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- H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings |
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-- LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \ |
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-- sed -e 's/-L/:/g' -e 's/ //g'`" \ |
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- $(RUNSERIAL) ./H5make_libsettings$(EXEEXT) > $@ || \ |
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- (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ |
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- ($(RM) $@ ; exit 1) |
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|
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diff --git a/sci-libs/hdf5/files/hdf5-1.8.9-implicits.patch b/sci-libs/hdf5/files/hdf5-1.8.9-implicits.patch |
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deleted file mode 100644 |
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index 43e4f07..0000000 |
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--- a/sci-libs/hdf5/files/hdf5-1.8.9-implicits.patch |
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+++ /dev/null |
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@@ -1,55 +0,0 @@ |
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---- b/configure.in |
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-+++ a/configure.in |
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-@@ -1499,6 +1499,9 @@ |
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- dnl though we do not do this as it breaks the big test on older versions |
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- dnl of linux (CentOS 4.6) using newer versions of gcc (4.6.2). |
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- AM_CPPFLAGS="-D_BSD_SOURCE $AM_CPPFLAGS" |
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-+ |
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-+ dnl _GNU_SOURCE is needed for vasprintf |
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-+ AM_CPPFLAGS="-D_GNU_SOURCE $AM_CPPFLAGS" |
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- ;; |
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- esac |
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- |
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---- a/test/cache_common.h |
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-+++ b/test/cache_common.h |
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-@@ -702,5 +702,9 @@ |
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- hbool_t compare_init, |
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- int test_num); |
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- |
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-+hbool_t resize_configs_are_equal(const H5C_auto_size_ctl_t *a, |
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-+ const H5C_auto_size_ctl_t *b, |
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-+ hbool_t compare_init); |
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-+ |
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- #endif /* _CACHE_COMMON_H */ |
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- |
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---- a/tools/misc/talign.c |
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-+++ b/tools/misc/talign.c |
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-@@ -23,6 +23,7 @@ |
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- |
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- #include "hdf5.h" |
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- #include "H5private.h" |
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-+#include "h5tools.h" |
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- |
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- const char *fname = "talign.h5"; |
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- const char *setname = "align"; |
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---- a/tools/h5repack/testh5repack_detect_szip.c |
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-+++ b/tools/h5repack/testh5repack_detect_szip.c |
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-@@ -17,6 +17,7 @@ |
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- #include "h5repack.h" |
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- #include "h5tools.h" |
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- #include "h5test.h" |
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-+#include "h5tools_utils.h" |
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- |
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- |
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- /* Name of tool */ |
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---- a/hl/src/H5LTanalyze.c |
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-+++ b/hl/src/H5LTanalyze.c |
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-@@ -49,7 +49,8 @@ |
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- #define YY_FLEX_MINOR_VERSION 5 |
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- |
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- #include <stdio.h> |
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-+#include "H5pubconf.h" |
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- #ifdef H5_HAVE_UNISTD_H |
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- #include <unistd.h> |
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- #endif |
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- |
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|
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diff --git a/sci-libs/hdf5/hdf5-1.8.9_pre14.ebuild b/sci-libs/hdf5/hdf5-1.8.9_pre14.ebuild |
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deleted file mode 100644 |
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index 702301a..0000000 |
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--- a/sci-libs/hdf5/hdf5-1.8.9_pre14.ebuild |
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+++ /dev/null |
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@@ -1,101 +0,0 @@ |
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-# Copyright 1999-2012 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.8.ebuild,v 1.4 2011/12/05 16:56:26 xarthisius Exp $ |
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- |
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-EAPI=4 |
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- |
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-inherit autotools eutils fortran-2 toolchain-funcs versionator |
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- |
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-MY_PV=$(replace_version_separator 3 '-') |
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-MY_PV=${MY_PV/pre/snap} |
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-MYP=${PN}-${MY_PV} |
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-VER=$(get_version_component_range 1-2) |
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-VER=v${VER/./} |
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- |
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-DESCRIPTION="General purpose library and file format for storing scientific data" |
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-HOMEPAGE="http://www.hdfgroup.org/HDF5/" |
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-SRC_URI="http://www.hdfgroup.uiuc.edu/ftp/pub/outgoing/${PN}/snapshots/${VER}/${MYP}.tar.bz2" |
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- |
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-LICENSE="NCSA-HDF" |
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-SLOT="0" |
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-KEYWORDS="" |
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-IUSE="cxx debug examples fortran fortran2003 mpi static-libs szip threads zlib" |
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-REQUIRED_USE="cxx? ( !mpi ) mpi? ( !cxx ) |
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- threads? ( !cxx !mpi !fortran ) |
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- fortran2003? ( fortran )" |
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- |
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-RDEPEND="fortran? ( virtual/fortran ) |
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- mpi? ( virtual/mpi[romio] ) |
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- szip? ( >=sci-libs/szip-2.1 ) |
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- zlib? ( sys-libs/zlib )" |
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- |
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-DEPEND="${RDEPEND} |
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- sys-devel/libtool:2" |
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- |
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-S=${WORKDIR}/${MYP} |
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- |
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-pkg_setup() { |
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- tc-export CXX CC FC # workaround for bug 285148 |
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- if use fortran; then |
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- use fortran2003 && FORTRAN_STANDARD=2003 |
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- fortran-2_pkg_setup |
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- fi |
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- if use mpi; then |
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- if has_version 'sci-libs/hdf5[-mpi]'; then |
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- ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail." |
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- ewarn "Try to uninstall the current hdf5 prior to enabling mpi support." |
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- fi |
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- export CC=mpicc |
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- use fortran && export FC=mpif90 |
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- elif has_version 'sci-libs/hdf5[mpi]'; then |
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- ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail." |
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- ewarn "Try to uninstall the current hdf5 prior to disabling mpi support." |
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- fi |
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-} |
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- |
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-src_prepare() { |
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- epatch "${FILESDIR}"/${PN}-1.8.8-buildsystem.patch \ |
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- "${FILESDIR}"/${PN}-1.8.8-array_bounds.patch \ |
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- "${FILESDIR}"/${PN}-1.8.9-implicits.patch |
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- # respect gentoo examples directory |
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- sed \ |
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- -e "s:hdf5_examples:doc/${PF}/examples:g" \ |
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- -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die |
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- sed \ |
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- -e '/docdir/d' \ |
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- -i config/commence.am || die |
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- eautoreconf |
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- # enable shared libs by default for h5cc config utility |
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- sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in || die |
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-} |
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- |
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-src_configure() { |
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- econf \ |
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- --disable-sharedlib-rpath \ |
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- --enable-production \ |
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- --docdir="${EPREFIX}"/usr/share/doc/${PF} \ |
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- --enable-deprecated-symbols \ |
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- --enable-shared \ |
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- --disable-silent-rules \ |
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- $(use_enable static-libs static) \ |
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- $(use_enable debug debug all) \ |
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- $(use_enable debug codestack) \ |
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- $(use_enable cxx) \ |
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- $(use_enable fortran) \ |
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- $(use_enable fortran2003) \ |
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- $(use_enable mpi parallel) \ |
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- $(use_enable threads threadsafe) \ |
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- $(use_with szip szlib) \ |
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- $(use_with threads pthread) \ |
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- $(use_with zlib) \ |
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- ${myconf} |
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-} |
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- |
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-src_install() { |
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- default |
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- use static-libs || find "${ED}" -name '*.la' -exec rm -f {} + |
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- |
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- if use examples; then |
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- emake DESTDIR="${D}" install-examples |
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- fi |
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-} |
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|
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diff --git a/sci-libs/hdf5/metadata.xml b/sci-libs/hdf5/metadata.xml |
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deleted file mode 100644 |
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index 6b6f687..0000000 |
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--- a/sci-libs/hdf5/metadata.xml |
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+++ /dev/null |
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@@ -1,19 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <herd>sci</herd> |
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- <maintainer> |
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- <email>xarthisius@g.o</email> |
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- <name>Kacper Kowalik</name> |
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- </maintainer> |
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- <longdescription> |
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- HDF5 is a file format and library for storing scientific data. HDF5 |
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- was designed and implemented to address the deficiencies of HDF4.x. It |
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- has a more powerful and flexible data model, supports files larger |
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- than 2 GB, and supports parallel I/O. |
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- </longdescription> |
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- <use> |
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- <flag name="fortran2003">enable new features that require Fortran 2003 |
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- (http://www.hdfgroup.org/HDF5/doc/fortran/NewFeatures_F2003.pdf)</flag> |
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- </use> |
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-</pkgmetadata> |