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xarthisius 11/11/21 17:33:09 |
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Added: hdf5-1.8.8-implicits.patch |
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hdf5-1.8.8-array_bounds.patch |
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Log: |
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Fix implicits and array out of bounds |
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|
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(Portage version: 2.2.0_alpha75/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.1 sci-libs/hdf5/files/hdf5-1.8.8-implicits.patch |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/hdf5/files/hdf5-1.8.8-implicits.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/hdf5/files/hdf5-1.8.8-implicits.patch?rev=1.1&content-type=text/plain |
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|
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Index: hdf5-1.8.8-implicits.patch |
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=================================================================== |
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--- b/configure.in |
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+++ a/configure.in |
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@@ -1499,6 +1499,9 @@ |
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dnl though we do not do this as it breaks the big test on older versions |
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dnl of linux (CentOS 4.6) using newer versions of gcc (4.6.2). |
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AM_CPPFLAGS="-D_BSD_SOURCE $AM_CPPFLAGS" |
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+ |
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+ dnl _GNU_SOURCE is needed for vasprintf |
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+ AM_CPPFLAGS="-D_GNU_SOURCE $AM_CPPFLAGS" |
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;; |
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esac |
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|
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--- a/test/cache_common.h |
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+++ b/test/cache_common.h |
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@@ -702,5 +702,9 @@ |
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hbool_t compare_init, |
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int test_num); |
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|
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+hbool_t resize_configs_are_equal(const H5C_auto_size_ctl_t *a, |
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+ const H5C_auto_size_ctl_t *b, |
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+ hbool_t compare_init); |
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+ |
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#endif /* _CACHE_COMMON_H */ |
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|
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--- a/tools/misc/talign.c |
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+++ b/tools/misc/talign.c |
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@@ -23,6 +23,7 @@ |
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|
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#include "hdf5.h" |
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#include "H5private.h" |
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+#include "h5tools.h" |
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|
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const char *fname = "talign.h5"; |
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const char *setname = "align"; |
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--- a/tools/h5repack/testh5repack_detect_szip.c |
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+++ b/tools/h5repack/testh5repack_detect_szip.c |
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@@ -17,6 +17,7 @@ |
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#include "h5repack.h" |
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#include "h5tools.h" |
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#include "h5test.h" |
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+#include "h5tools_utils.h" |
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|
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|
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/* Name of tool */ |
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--- a/tools/h5jam/h5jam.c |
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+++ b/tools/h5jam/h5jam.c |
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@@ -15,6 +15,7 @@ |
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|
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#include "hdf5.h" |
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#include "H5private.h" |
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+#include "h5tools.h" |
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#include "h5tools_utils.h" |
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|
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/* Name of tool */ |
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--- a/tools/h5jam/h5unjam.c |
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+++ b/tools/h5jam/h5unjam.c |
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@@ -15,6 +15,7 @@ |
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|
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#include "hdf5.h" |
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#include "H5private.h" |
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+#include "h5tools.h" |
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#include "h5tools_utils.h" |
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|
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/* Name of tool */ |
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--- a/tools/h5copy/h5copygentest.c |
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+++ b/tools/h5copy/h5copygentest.c |
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@@ -20,6 +20,7 @@ |
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#include "hdf5.h" |
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#include "H5private.h" |
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#include "h5tools.h" |
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+#include "h5tools_utils.h" |
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|
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/* Name of tool */ |
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#define PROGRAMNAME "h5copygentest" |
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--- a/hl/src/H5LTanalyze.c |
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+++ b/hl/src/H5LTanalyze.c |
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@@ -49,7 +49,8 @@ |
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#define YY_FLEX_MINOR_VERSION 5 |
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|
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#include <stdio.h> |
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+#include "H5pubconf.h" |
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#ifdef H5_HAVE_UNISTD_H |
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#include <unistd.h> |
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#endif |
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|
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|
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|
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1.1 sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/hdf5/files/hdf5-1.8.8-array_bounds.patch?rev=1.1&content-type=text/plain |
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|
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Index: hdf5-1.8.8-array_bounds.patch |
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=================================================================== |
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--- a/perform/pio_engine.c |
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+++ b/perform/pio_engine.c |
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@@ -454,7 +454,7 @@ |
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subdir = (user ? user : login); |
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|
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if (subdir) { |
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- for (i = 0; i < size && prefix[i]; i++) |
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+ for (i = 0; i < size-1 && prefix[i]; i++) |
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fullname[i] = prefix[i]; |
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|
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fullname[i++] = '/'; |
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--- a/perform/sio_engine.c |
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+++ b/perform/sio_engine.c |
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@@ -353,7 +353,7 @@ |
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subdir = (user ? user : login); |
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|
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if (subdir) { |
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- for (i = 0; i < size && prefix[i]; i++) |
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+ for (i = 0; i < size-1 && prefix[i]; i++) |
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fullname[i] = prefix[i]; |
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|
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fullname[i++] = '/'; |
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