Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pybedtools/
Date: Wed, 06 May 2020 18:22:42
Message-Id: 1588789340.e29df37c8b9b02f3749a57c2075bed05f0a71260.mmokrejs@gentoo
1 commit: e29df37c8b9b02f3749a57c2075bed05f0a71260
2 Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
3 AuthorDate: Wed May 6 18:22:00 2020 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Wed May 6 18:22:20 2020 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e29df37c
7
8 sci-biology/pybedtools: respect minimal and doc USE flags
9
10 Installation of the to be generated doc pages is not tested
11 as I am blocked by bug #721306. Probably some dir needs to be
12 recursively installed.
13
14 Package-Manager: Portage-2.3.95, Repoman-2.3.22
15 Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
16
17 sci-biology/pybedtools/pybedtools-0.8.0.ebuild | 7 +++++--
18 1 file changed, 5 insertions(+), 2 deletions(-)
19
20 diff --git a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
21 index cd444a09e..9d4dc23c0 100644
22 --- a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
23 +++ b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
24 @@ -14,15 +14,18 @@ SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz -> ${P}.tar.g
25 LICENSE="MIT"
26 SLOT="0"
27 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
28 -IUSE=""
29 +IUSE="doc minimal"
30
31 RDEPEND="
32 sci-biology/bedtools
33 - sci-biology/pysam"
34 + sci-biology/pysam
35 + !minimal? ( sci-libs/htslib )
36 + doc? ( dev-python/sphinx )"
37 DEPEND="${RDEPEND}
38 dev-python/cython[${PYTHON_USEDEP}]"
39
40 src_compile(){
41 python setup.py cythonize
42 default
43 + use doc && cd docs && emake html
44 }