[gentoo-commits] dev/bicatali:master commit in: sci-libs/cholmod/

[Sebastien Fabbro]

commit:     6d826acffec0f0da40e2a5b7a8eef19cc1a0156f
Author:     Sébastien Fabbro <bicatali <AT> gentoo <DOT> org>
AuthorDate: Wed Jun  1 05:28:10 2011 +0000
Commit:     Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Wed Jun  1 05:28:10 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=dev/bicatali.git;a=commit;h=6d826acf

added cholmod for metis

---
 sci-libs/cholmod/ChangeLog               |  110 ++++++++++++++++++++++++++++++
 sci-libs/cholmod/Manifest                |    5 ++
 sci-libs/cholmod/cholmod-1.7.3-r1.ebuild |   92 +++++++++++++++++++++++++
 sci-libs/cholmod/metadata.xml            |   15 ++++
 4 files changed, 222 insertions(+), 0 deletions(-)

diff --git a/sci-libs/cholmod/ChangeLog b/sci-libs/cholmod/ChangeLog
new file mode 100644
index 0000000..4fd38d8
--- /dev/null
+++ b/sci-libs/cholmod/ChangeLog
@@ -0,0 +1,110 @@
+# ChangeLog for sci-libs/cholmod
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cholmod/ChangeLog,v 1.25 2011/02/23 19:53:33 bicatali Exp $
+
+*cholmod-1.7.3-r1 (01 Jun 2011)
+
+  01 Jun 2011; Sébastien Fabbro <bicatali@g.o>
+  +cholmod-1.7.3-r1.ebuild, +metadata.xml:
+  Switched to virtual/metis. EAPI4.
+
+*cholmod-1.7.3 (23 Feb 2011)
+
+  23 Feb 2011; Sébastien Fabbro <bicatali@g.o> +cholmod-1.7.3.ebuild:
+  Bump
+
+  22 Dec 2010; Sébastien Fabbro <bicatali@g.o> cholmod-1.7.1.ebuild:
+  Added static-libs flag. Enable supernodal flag by default.
+
+  09 Jul 2010; Samuli Suominen <ssuominen@g.o>
+  cholmod-1.6.0-r1.ebuild:
+  ppc64 stable wrt #318649
+
+  02 Jan 2010; Christian Faulhammer <fauli@g.o> cholmod-1.7.1.ebuild:
+  Transfer Prefix keywords
+
+*cholmod-1.7.1 (21 Nov 2009)
+
+  21 Nov 2009; Sébastien Fabbro <bicatali@g.o>
+  -cholmod-1.7.0-r1.ebuild, +cholmod-1.7.1.ebuild:
+  Version bump
+
+  12 Oct 2009; Jeroen Roovers <jer@g.o> cholmod-1.6.0-r1.ebuild:
+  Stable for HPPA (bug #245707).
+
+  27 Sep 2009; nixnut <nixnut@g.o> cholmod-1.6.0-r1.ebuild:
+  ppc stable #245707
+
+  20 Apr 2009; Markus Meier <maekke@g.o> cholmod-1.6.0-r1:
+  x86 stable, bug #245707
+
+  27 Mar 2009; Ferris McCormick <fmccor@g.o> cholmod-1.6.0-r1.ebuild:
+  Sparc stable, preparation for bug #245707.
+
+  23 Mar 2009; Jeremy Olexa <darkside@g.o> cholmod-1.6.0-r1.ebuild:
+  amd64 stable, bug 245707
+
+*cholmod-1.7.0-r1 (14 Mar 2009)
+
+  14 Mar 2009; Sébastien Fabbro <bicatali@g.o>
+  -cholmod-1.7.0.ebuild, +cholmod-1.7.0-r1.ebuild:
+  Now install headers used for internal suitesparse packages
+
+*cholmod-1.7.0 (09 Mar 2009)
+
+  09 Mar 2009; Sébastien Fabbro <bicatali@g.o>
+  +cholmod-1.7.0.ebuild:
+  Version bump
+
+  08 Feb 2009; Tobias Klausmann <klausman@g.o>
+  cholmod-1.6.0-r1.ebuild:
+  Stable on alpha, bug #245707
+
+  10 Oct 2008; Sébastien Fabbro <bicatali@g.o>
+  cholmod-1.6.0-r1.ebuild:
+  Fixed a syntax error in the minimal flag, and added blas configuration in
+  the supernodal mode
+
+  07 Aug 2008; Ulrich Mueller <ulm@g.o> metadata.xml:
+  Add USE flag description to metadata wrt GLEP 56.
+
+  22 May 2008; Justin Bronder <jsbronder@g.o>
+  cholmod-1.6.0-r1.ebuild:
+  Added ~ppc (#219458)
+
+  11 May 2008; Markus Rothe <corsair@g.o> cholmod-1.6.0-r1.ebuild:
+  Added ppc64; bug #219458
+
+  05 May 2008; Justin Bronder <jsbronder@g.o>
+  files/cholmod-1.6.0-autotools.patch:
+  Bug #220263, fix typo in patch (PARTITIOn -> PARTITION).  Thanks to Juan
+  Aguado (juantxorena at gmail) for tracking this down.
+
+  28 Apr 2008; Tobias Klausmann <klausman@g.o>
+  cholmod-1.6.0-r1.ebuild:
+  Keyworded on alpha, bug #219458
+
+  28 Apr 2008; Jeroen Roovers <jer@g.o> cholmod-1.6.0-r1.ebuild:
+  Marked ~hppa (bug #219458).
+
+  27 Apr 2008; Ferris McCormick <fmccor@g.o> cholmod-1.6.0-r1.ebuild:
+  Add ~sparc keyword, Bug #219460.  All tests pass.
+
+*cholmod-1.6.0-r1 (28 Mar 2008)
+
+  28 Mar 2008; Sébastien Fabbro <bicatali@g.o>
+  files/cholmod-1.6.0-autotools.patch, -cholmod-1.6.0.ebuild,
+  +cholmod-1.6.0-r1.ebuild:
+  Fixed header locations for metis, added support for pkg-config for lapack
+  and metis, cleaned up autotools and ebuild
+
+  27 Mar 2008; Sébastien Fabbro <bicatali@g.o> cholmod-1.6.0.ebuild:
+  Added parmetis as a possible graph partitoner
+
+*cholmod-1.6.0 (05 Feb 2008)
+
+  05 Feb 2008; Sébastien Fabbro <bicatali@g.o>
+  +files/cholmod-1.6.0-autotools.patch, +metadata.xml,
+  +cholmod-1.6.0.ebuild:
+  Initial import. Thanks to Justin Bronder for his work, see bug #173900
+

diff --git a/sci-libs/cholmod/Manifest b/sci-libs/cholmod/Manifest
new file mode 100644
index 0000000..9d9f421
--- /dev/null
+++ b/sci-libs/cholmod/Manifest
@@ -0,0 +1,5 @@
+DIST CHOLMOD-1.7.3.tar.gz 1180532 RMD160 434dca8d923721d89421d7c4c674aa3fb2335c34 SHA1 c85ce011da25337f53c0a5b11e329d855698caa0 SHA256 f89b3a0db56add3f78139db258a7868a72ccb8d57361ef6645e6a47db7ce9680
+DIST cholmod-1.7.0-autotools.patch.bz2 5534 RMD160 883ba50e6516f7666dc2933470d1c76f14ce5424 SHA1 0c15bc824b590d096998417f07b1849cc6f645fb SHA256 901b83939ce09a51baa9431639d4fbebde1bfd70998b4b66d2753a91daed931c
+EBUILD cholmod-1.7.3-r1.ebuild 2564 RMD160 797c19a5759ee8c363573d84a678907dd8c21b87 SHA1 c63c36249f59c9af431bc6c70928f4a0c873838f SHA256 827065917817331a85d81263cd590bd87403f71f39921cf6e794fe54463dcbcd
+MISC ChangeLog 3690 RMD160 347f420103417f04b3414bad39761d95c07f07d8 SHA1 892037c1e57645954d0083b9d39b1dbfa83f4630 SHA256 70fd6d9e274a8969faeee3740632f5ad8da695de280ed217232509c6b2874783
+MISC metadata.xml 552 RMD160 234d8a3ae181d8fa6e2cd5c9b64050c4d8ff4c92 SHA1 e79c60df8b050a50660e5e3a1f971ab6f10af4cf SHA256 d3f2b40d7d8a85e9f9d0de4c6fb9faad10ce6b6c02784470c1acba6d0f50b73d

diff --git a/sci-libs/cholmod/cholmod-1.7.3-r1.ebuild b/sci-libs/cholmod/cholmod-1.7.3-r1.ebuild
new file mode 100644
index 0000000..1732e85
--- /dev/null
+++ b/sci-libs/cholmod/cholmod-1.7.3-r1.ebuild
@@ -0,0 +1,92 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cholmod/cholmod-1.7.3.ebuild,v 1.1 2011/02/23 19:53:33 bicatali Exp $
+
+EAPI=4
+inherit eutils autotools
+
+MY_PN=CHOLMOD
+PPV=1.7.0
+
+DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz
+	mirror://gentoo/${PN}-${PPV}-autotools.patch.bz2"
+
+LICENSE="LGPL-2.1 GPL-2"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="doc metis minimal static-libs +supernodal"
+
+RDEPEND="supernodal? ( virtual/lapack )
+	sci-libs/amd
+	sci-libs/colamd
+	metis? ( sci-libs/camd
+			 sci-libs/ccolamd
+			 virtual/metis )"
+
+DEPEND="${RDEPEND}
+	supernodal? ( dev-util/pkgconfig )
+	metis? ( dev-util/pkgconfig )"
+
+S="${WORKDIR}/${MY_PN}"
+
+src_prepare() {
+	cd "${WORKDIR}"
+	epatch "${WORKDIR}"/${PN}-${PPV}-autotools.patch
+	cd "${S}"
+	# We need to take care of cholmod.h here as well depending on
+	# the USE flags, otherwise the installed file will reference
+	# headers that we may not have included.
+	if use minimal; then
+		sed -i '/^#define CHOLMOD_/{N;
+		s:\(#define\) \(CHOLMOD_CONFIG_H\)\n:\1 \2\n\1 NMODIFY 1\n\1 NMATRIXOPS 1\n:}' \
+		Include/cholmod_config.h
+	fi
+
+	if ! use supernodal; then
+		sed -i '/^#define CHOLMOD_/{N;
+		s:\(#define\) \(CHOLMOD_CONFIG_H\)\n:\1 \2\n\1 NSUPERNODAL 1\n:}' \
+		Include/cholmod_config.h
+	fi
+
+	if ! use metis; then
+		sed -i '/^#define CHOLMOD_/{N;
+		s:\(#define\) \(CHOLMOD_CONFIG_H\)\n:\1 \2\n\1 NPARTITION 1\n:}' \
+		Include/cholmod_config.h
+	fi
+	eautoreconf
+}
+
+src_configure() {
+	local lapack_libs=no
+	local blas_libs=no
+	if use supernodal; then
+		blas_libs=$(pkg-config --libs blas)
+		lapack_libs=$(pkg-config --libs lapack)
+	fi
+	econf \
+		--with-blas="${blas_libs}" \
+		--with-lapack="${lapack_libs}" \
+		$(use_enable supernodal mod-supernodal) \
+		$(use_enable !minimal mod-modify) \
+		$(use_enable !minimal mod-matrixops) \
+		$(use_enable metis mod-partition) \
+		$(use_enable static-libs static)
+}
+
+src_test() {
+	if ! use supernodal || ! use metis || use minimal; then
+		ewarn "According to your useflags, some modules were not built on"
+		ewarn "purpose. This can cause the tests included with Cholmod"
+		ewarn "to fail. Rebuild with USE=\"supernodal metis -minimal\""
+		ewarn "if you care."
+	fi
+	cd "${S}"/Demo
+	emake test
+}
+
+src_install() {
+	default
+	use doc && dodoc Doc/UserGuide.pdf
+}

diff --git a/sci-libs/cholmod/metadata.xml b/sci-libs/cholmod/metadata.xml
new file mode 100644
index 0000000..eafad5c
--- /dev/null
+++ b/sci-libs/cholmod/metadata.xml
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<longdescription lang="en">
+  CHOLMOD is a set of ANSI C routines for sparse Cholesky
+  factorization and update/downdate.
+</longdescription>
+<use>
+  <flag name='metis'>Enable the Partition module to cholmod using metis
+    (<pkg>sci-libs/metis</pkg>, <pkg>sci-libs/parmetis</pkg>)</flag>
+  <flag name='supernodal'>Enable the Supernodal module
+    (needs <pkg>virtual/lapack</pkg>)</flag>
+</use>
+</pkgmetadata>