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| From: | Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] proj/sci:master commit in: sci-biology/fgap-bin/ |
| Date: | Wed, 30 Mar 2016 14:41:26 |
| Message-Id: | 1459348714.479fe1c49274ccaa6ad0d55f5262ce6d9a6fe436.mmokrejs@gentoo |
| 1 | commit: 479fe1c49274ccaa6ad0d55f5262ce6d9a6fe436 |
| 2 | Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 3 | AuthorDate: Wed Mar 30 14:38:34 2016 +0000 |
| 4 | Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
| 5 | CommitDate: Wed Mar 30 14:38:34 2016 +0000 |
| 6 | URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=479fe1c4 |
| 7 | |
| 8 | fixing /# : $/# $/ |
| 9 | |
| 10 | Package-Manager: portage-2.2.28 |
| 11 | |
| 12 | sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild | 25 +++++++++++++++++++++++++ |
| 13 | sci-biology/fgap-bin/metadata.xml | 12 ++++++++++++ |
| 14 | 2 files changed, 37 insertions(+) |
| 15 | |
| 16 | diff --git a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild b/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild |
| 17 | new file mode 100644 |
| 18 | index 0000000..cb3f72d |
| 19 | --- /dev/null |
| 20 | +++ b/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild |
| 21 | @@ -0,0 +1,25 @@ |
| 22 | +# Copyright 1999-2016 Gentoo Foundation |
| 23 | +# Distributed under the terms of the GNU General Public License v2 |
| 24 | +# $Id$ |
| 25 | + |
| 26 | +EAPI=5 |
| 27 | + |
| 28 | +DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds" |
| 29 | +HOMEPAGE="http://www.bioinfo.ufpr.br/fgap" |
| 30 | +SRC_URI="https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz" |
| 31 | +# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371 |
| 32 | + |
| 33 | +LICENSE="MIT" |
| 34 | +SLOT="0" |
| 35 | +KEYWORDS="" |
| 36 | +IUSE="" |
| 37 | + |
| 38 | +# Matlab (R2012a) or Octave (3.6.2) |
| 39 | +# |
| 40 | +# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m |
| 41 | + |
| 42 | +# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz |
| 43 | +# http://www.mathworks.com/products/compiler/mcr/index.html |
| 44 | +DEPEND="" |
| 45 | +RDEPEND="${DEPEND} |
| 46 | + sci-biology/ncbi-tools+" |
| 47 | |
| 48 | diff --git a/sci-biology/fgap-bin/metadata.xml b/sci-biology/fgap-bin/metadata.xml |
| 49 | new file mode 100644 |
| 50 | index 0000000..f68a1b6 |
| 51 | --- /dev/null |
| 52 | +++ b/sci-biology/fgap-bin/metadata.xml |
| 53 | @@ -0,0 +1,12 @@ |
| 54 | +<?xml version="1.0" encoding="UTF-8"?> |
| 55 | +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 56 | +<pkgmetadata> |
| 57 | + <maintainer type="person"> |
| 58 | + <email>mmokrejs@×××××××××××××××.cz</email> |
| 59 | + <name>Martin Mokrejs</name> |
| 60 | + </maintainer> |
| 61 | + <maintainer type="project"> |
| 62 | + <email>sci-biology@g.o</email> |
| 63 | + <name>Gentoo Biology Project</name> |
| 64 | + </maintainer> |
| 65 | +</pkgmetadata> |