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commit: 1a1e9755d0985ab7f3e9107be9125aead76d1b7c |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Mon Jan 29 15:29:09 2018 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Mon Jan 29 15:29:09 2018 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1a1e9755 |
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|
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sci-biology/chiron: new package |
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|
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Will need more work to get CPU- and GPU-based features enabled |
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at once, or will need two separate installs? |
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|
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Package-Manager: Portage-2.3.20, Repoman-2.3.6 |
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|
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sci-biology/chiron/chiron-9999.ebuild | 22 ++++++++++++++++++++++ |
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sci-biology/chiron/metadata.xml | 12 ++++++++++++ |
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2 files changed, 34 insertions(+) |
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|
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diff --git a/sci-biology/chiron/chiron-9999.ebuild b/sci-biology/chiron/chiron-9999.ebuild |
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new file mode 100644 |
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index 000000000..daf1c15b9 |
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--- /dev/null |
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+++ b/sci-biology/chiron/chiron-9999.ebuild |
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@@ -0,0 +1,22 @@ |
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+# Copyright 1999-2018 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+PYTHON_COMPAT=( python2_7 pypy ) |
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+ |
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+inherit distutils-r1 eutils git-r3 |
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+ |
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+DESCRIPTION="Basecaller for OxfordNanopore data using deep learning" |
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+HOMEPAGE="https://github.com/haotianteng/chiron |
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+ https://www.biorxiv.org/content/early/2017/09/12/179531" |
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+EGIT_REPO_URI="https://github.com/haotianteng/chiron" |
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+ |
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+LICENSE="MPL-2.0" |
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+SLOT="0" |
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+KEYWORDS="" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND} |
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+ dev-python/h5py" |
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|
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diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml |
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new file mode 100644 |
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index 000000000..138cb7705 |
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--- /dev/null |
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+++ b/sci-biology/chiron/metadata.xml |
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@@ -0,0 +1,12 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <maintainer type="person"> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+ <maintainer type="project"> |
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+ <email>sci-biology@g.o</email> |
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+ <name>Gentoo Biology Project</name> |
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+ </maintainer> |
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+</pkgmetadata> |