Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/chiron/
Date: Mon, 29 Jan 2018 15:29:23
Message-Id: 1517239749.1a1e9755d0985ab7f3e9107be9125aead76d1b7c.mmokrejs@gentoo
1 commit: 1a1e9755d0985ab7f3e9107be9125aead76d1b7c
2 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Mon Jan 29 15:29:09 2018 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Mon Jan 29 15:29:09 2018 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1a1e9755
7
8 sci-biology/chiron: new package
9
10 Will need more work to get CPU- and GPU-based features enabled
11 at once, or will need two separate installs?
12
13 Package-Manager: Portage-2.3.20, Repoman-2.3.6
14
15 sci-biology/chiron/chiron-9999.ebuild | 22 ++++++++++++++++++++++
16 sci-biology/chiron/metadata.xml | 12 ++++++++++++
17 2 files changed, 34 insertions(+)
18
19 diff --git a/sci-biology/chiron/chiron-9999.ebuild b/sci-biology/chiron/chiron-9999.ebuild
20 new file mode 100644
21 index 000000000..daf1c15b9
22 --- /dev/null
23 +++ b/sci-biology/chiron/chiron-9999.ebuild
24 @@ -0,0 +1,22 @@
25 +# Copyright 1999-2018 Gentoo Foundation
26 +# Distributed under the terms of the GNU General Public License v2
27 +
28 +EAPI=6
29 +
30 +PYTHON_COMPAT=( python2_7 pypy )
31 +
32 +inherit distutils-r1 eutils git-r3
33 +
34 +DESCRIPTION="Basecaller for OxfordNanopore data using deep learning"
35 +HOMEPAGE="https://github.com/haotianteng/chiron
36 + https://www.biorxiv.org/content/early/2017/09/12/179531"
37 +EGIT_REPO_URI="https://github.com/haotianteng/chiron"
38 +
39 +LICENSE="MPL-2.0"
40 +SLOT="0"
41 +KEYWORDS=""
42 +IUSE=""
43 +
44 +DEPEND=""
45 +RDEPEND="${DEPEND}
46 + dev-python/h5py"
47
48 diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml
49 new file mode 100644
50 index 000000000..138cb7705
51 --- /dev/null
52 +++ b/sci-biology/chiron/metadata.xml
53 @@ -0,0 +1,12 @@
54 +<?xml version="1.0" encoding="UTF-8"?>
55 +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
56 +<pkgmetadata>
57 + <maintainer type="person">
58 + <email>mmokrejs@×××××××××××××××.cz</email>
59 + <name>Martin Mokrejs</name>
60 + </maintainer>
61 + <maintainer type="project">
62 + <email>sci-biology@g.o</email>
63 + <name>Gentoo Biology Project</name>
64 + </maintainer>
65 +</pkgmetadata>