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commit: f5bcc5911aea4f5c5cb38e65c8bc1a01fbc6bcf2 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Tue Aug 31 09:19:28 2021 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Tue Aug 31 09:19:28 2021 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f5bcc591 |
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|
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sci-biology/cgview-bin: remove last-rited pack |
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|
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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profiles/package.mask | 1 - |
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sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild | 43 -------------------------- |
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sci-biology/cgview-bin/metadata.xml | 12 ------- |
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3 files changed, 56 deletions(-) |
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|
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diff --git a/profiles/package.mask b/profiles/package.mask |
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index a58bd71ee..83a94e897 100644 |
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--- a/profiles/package.mask |
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+++ b/profiles/package.mask |
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@@ -37,7 +37,6 @@ |
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# Bug #798015, removal in 30 days. |
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# Perhaps these packages work with the newer ncbi-tools++? If anyone is actively |
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# using these packages please open a bug report |
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-sci-biology/cgview-bin |
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sci-biology/prot4EST |
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sci-biology/seqclean |
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sci-chemistry/talosn |
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|
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diff --git a/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild b/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild |
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deleted file mode 100644 |
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index 5135e04ab..000000000 |
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--- a/sci-biology/cgview-bin/cgview-bin-1.0.0.ebuild |
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+++ /dev/null |
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@@ -1,43 +0,0 @@ |
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-# Copyright 1999-2021 Gentoo Authors |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=7 |
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- |
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-inherit java-pkg-2 perl-module eutils toolchain-funcs |
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- |
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-DESCRIPTION="CGView Comparison Tool to compare genome sequences graphically (aka CCT)" |
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-HOMEPAGE="https://paulstothard.github.io/cgview_comparison_tool/" |
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-SRC_URI="https://github.com/paulstothard/cgview_comparison_tool/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
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- |
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-LICENSE="GPL-2" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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- |
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-DEPEND=" |
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- >=dev-lang/perl-5.8.8 |
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- >=sci-biology/ncbi-tools-2.2.15 |
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- >=virtual/jre-1.4.2:* |
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- dev-java/xerces:2 |
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- dev-java/batik |
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- dev-java/commons-lang:2.1 |
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- >=media-gfx/imagemagick-6 |
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- >=sci-biology/bioperl-1.4.0" |
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-RDEPEND="${DEPEND}" |
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- |
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-S="${WORKDIR}/cgview_comparison_tool-${PV}" |
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- |
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-src_install() { |
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- insinto /usr/share/${PN}/scripts |
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- chmod a+x scripts/* # BUG: this does not work |
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- doins -r scripts/* |
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- insinto /usr/share/${PN}/lib/scripts |
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- doins -r lib/scripts/* |
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- echo 'CCT_HOME='${EPREFIX}'/usr/share/cgview' > "${S}/99cgview" |
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- echo 'PATH="$PATH":"'${CCT_HOME}'/scripts"' >> "${S}/99cgview" |
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- doenvd "${S}/99cgview" |
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- perl_set_version |
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- perl_domodule lib/perl_modules/Util/*.pm |
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- # |
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- # Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/batik/svggen/SVGGraphics2DIOException |
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- java-pkg_dojar bin/cgview/cgview.jar |
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-} |
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|
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diff --git a/sci-biology/cgview-bin/metadata.xml b/sci-biology/cgview-bin/metadata.xml |
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deleted file mode 100644 |
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index 138cb7705..000000000 |
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--- a/sci-biology/cgview-bin/metadata.xml |
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+++ /dev/null |
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@@ -1,12 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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-</pkgmetadata> |