Gentoo Archives: gentoo-commits

From: Andreas Sturmlechner <asturm@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/express/
Date: Sun, 14 Oct 2018 16:34:47
Message-Id: 1539534869.fad62bd824b9ea69a19200061544567eb9e78730.asturm@gentoo
1 commit: fad62bd824b9ea69a19200061544567eb9e78730
2 Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
3 AuthorDate: Sun Oct 14 16:30:19 2018 +0000
4 Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
5 CommitDate: Sun Oct 14 16:34:29 2018 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fad62bd8
7
8 sci-biology/express: Drop old
9
10 Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>
11 Package-Manager: Portage-2.3.51, Repoman-2.3.11
12
13 sci-biology/express/Manifest | 1 -
14 sci-biology/express/express-0.9.5-r1.ebuild | 35 -----------------------------
15 2 files changed, 36 deletions(-)
16
17 diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest
18 index 2e05adafed7..9c2cc4ebf49 100644
19 --- a/sci-biology/express/Manifest
20 +++ b/sci-biology/express/Manifest
21 @@ -1,2 +1 @@
22 -DIST express-0.9.5-src.tgz 766024 BLAKE2B 3818bc9de30a5201d587d3e18feee85f3014b68672eaef32ce0fa5989e0ce2cd7ee8bb8c617db0cde2d061db0f31ba76c49aa03f66be92c40826a6ede35ebca9 SHA512 3a7360ffbe57f4f712b6db38d551d31384d995050a86238d79299edb12f0e7f5dca6f362b7858b5051ea2879af2b3559f78f9780d75ef2ef6fdad7398f781403
23 DIST express-1.5.1-src.tgz 931166 BLAKE2B 5eb185e4b001f26f0dd32885b256b9fa48c89f546d67d7f8472cade69dde25375a5fc8efed5f01b615d63b641b674f7034a13f9483eb7967a6fd784a55c8878e SHA512 59cf6511a879311247c65334285ea056d571d4fd950aa6243041fa10075ff0d1ddd2afbcfe12e5f7f3e7cdd22fe37fd7f6b43ed4a8eb28d7a33d72366dc549ee
24
25 diff --git a/sci-biology/express/express-0.9.5-r1.ebuild b/sci-biology/express/express-0.9.5-r1.ebuild
26 deleted file mode 100644
27 index 945398a17a8..00000000000
28 --- a/sci-biology/express/express-0.9.5-r1.ebuild
29 +++ /dev/null
30 @@ -1,35 +0,0 @@
31 -# Copyright 1999-2014 Gentoo Foundation
32 -# Distributed under the terms of the GNU General Public License v2
33 -
34 -EAPI=5
35 -
36 -inherit cmake-utils
37 -
38 -DESCRIPTION="Streaming RNA-Seq Analysis"
39 -HOMEPAGE="http://bio.math.berkeley.edu/eXpress/"
40 -SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz"
41 -
42 -LICENSE="Artistic"
43 -SLOT="0"
44 -KEYWORDS="~amd64 ~x86"
45 -
46 -DEPEND="
47 - >=dev-libs/boost-1.52.0:=
48 - sys-libs/zlib
49 - sci-biology/bamtools"
50 -RDEPEND="${DEPEND}"
51 -
52 -S="${WORKDIR}/${P}-src"
53 -
54 -CMAKE_USE_DIR="${S}/src"
55 -
56 -src_prepare() {
57 - sed \
58 - -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \
59 - -e '1 a find_package(Boost 1.52 COMPONENTS filesystem program_options system thread)' \
60 - -e '1 a find_package(ZLIB)' \
61 - -e '/add_executable/ a include_directories("/usr/include/bamtools")' \
62 - -i src/CMakeLists.txt || die
63 -
64 - cmake-utils_src_prepare
65 -}