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commit: f7197b7ce3f627083bdac70048b0711968472b49 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Mon Feb 2 20:51:29 2015 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Mon Feb 2 20:51:29 2015 +0000 |
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URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f7197b7c |
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|
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sci-biology/tagdust: new package |
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|
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Package-Manager: portage-2.2.15 |
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|
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--- |
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sci-biology/tagdust/ChangeLog | 9 ++++++++ |
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sci-biology/tagdust/metadata.xml | 9 ++++++++ |
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sci-biology/tagdust/tagdust-20101028.ebuild | 33 +++++++++++++++++++++++++++++ |
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3 files changed, 51 insertions(+) |
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|
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diff --git a/sci-biology/tagdust/ChangeLog b/sci-biology/tagdust/ChangeLog |
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new file mode 100644 |
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index 0000000..8d2d813 |
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--- /dev/null |
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+++ b/sci-biology/tagdust/ChangeLog |
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@@ -0,0 +1,9 @@ |
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+# ChangeLog for sci-biology/tagdust |
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+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: $ |
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+ |
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+*tagdust-20101028 (02 Feb 2015) |
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+ |
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+ 02 Feb 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +metadata.xml, |
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+ +tagdust-20101028.ebuild: |
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+ sci-biology/tagdust: new package |
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|
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diff --git a/sci-biology/tagdust/metadata.xml b/sci-biology/tagdust/metadata.xml |
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new file mode 100644 |
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index 0000000..2bc8930 |
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--- /dev/null |
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+++ b/sci-biology/tagdust/metadata.xml |
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@@ -0,0 +1,9 @@ |
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+<?xml version="1.0" encoding="UTF-8"?> |
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+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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+<pkgmetadata> |
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+ <herd>sci-biology</herd> |
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+ <maintainer> |
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+ <email>mmokrejs@×××××××××××××××.cz</email> |
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+ <name>Martin Mokrejs</name> |
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+ </maintainer> |
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+</pkgmetadata> |
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|
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diff --git a/sci-biology/tagdust/tagdust-20101028.ebuild b/sci-biology/tagdust/tagdust-20101028.ebuild |
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new file mode 100644 |
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index 0000000..b9e0862 |
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--- /dev/null |
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+++ b/sci-biology/tagdust/tagdust-20101028.ebuild |
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@@ -0,0 +1,33 @@ |
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+# Copyright 1999-2015 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Header: $ |
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+ |
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+EAPI=5 |
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+ |
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+DESCRIPTION="Trim multimers of various primers/adapter from Illumina datasets" |
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+HOMEPAGE="http://genome.gsc.riken.jp/osc/english/dataresource" |
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+SRC_URI="http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz" |
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+ |
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+LICENSE="GPL-3" |
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+SLOT="0" |
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+KEYWORDS="~amd64" |
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+IUSE="" |
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+ |
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+DEPEND="" |
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+RDEPEND="${DEPEND}" |
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+ |
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+S="${WORKDIR}"/tagdust |
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+ |
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+src_prepare(){ |
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+ sed -e "s/^CFLAGS/#CFLAGS/" -e "s#/usr/local/bin#\$(DESTDIR)/usr/bin#" \ |
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+ -e "s#/usr/share/man/#\$(DESTDIR)/usr/share/man/#" -i Makefile |
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+} |
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+ |
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+src_install(){ |
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+ doman tagdust.1 |
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+ dobin tagdust |
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+ insinto /usr/share/tagdust/Illumina |
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+ doins "test/"solexa*.fa |
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+ insinto /usr/share/tagdust |
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+ doins "test/"protocol.txt README |
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+} |