| 1 |
commit: 6fdee212269c999a4ec6ceb020115f6b9959d20f |
| 2 |
Author: Horea Christian <chr <AT> chymera <DOT> eu> |
| 3 |
AuthorDate: Sun Sep 27 07:33:55 2020 +0000 |
| 4 |
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
| 5 |
CommitDate: Sun Sep 27 07:33:55 2020 +0000 |
| 6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6fdee212 |
| 7 |
|
| 8 |
sci-biology/gffutils: version bump 0.10.1, test and PYTHON_COMPAT fix |
| 9 |
|
| 10 |
Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
| 11 |
Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
| 12 |
|
| 13 |
...utils-0.8.7.1.ebuild => gffutils-0.10.1.ebuild} | 26 +++++++++++++++++----- |
| 14 |
sci-biology/gffutils/gffutils-0.8.7.1.ebuild | 6 ++--- |
| 15 |
2 files changed, 24 insertions(+), 8 deletions(-) |
| 16 |
|
| 17 |
diff --git a/sci-biology/gffutils/gffutils-0.8.7.1.ebuild b/sci-biology/gffutils/gffutils-0.10.1.ebuild |
| 18 |
similarity index 51% |
| 19 |
copy from sci-biology/gffutils/gffutils-0.8.7.1.ebuild |
| 20 |
copy to sci-biology/gffutils/gffutils-0.10.1.ebuild |
| 21 |
index 787a5668a..f33541347 100644 |
| 22 |
--- a/sci-biology/gffutils/gffutils-0.8.7.1.ebuild |
| 23 |
+++ b/sci-biology/gffutils/gffutils-0.10.1.ebuild |
| 24 |
@@ -1,9 +1,9 @@ |
| 25 |
-# Copyright 1999-2017 Gentoo Foundation |
| 26 |
+# Copyright 1999-2020 Gentoo Authors |
| 27 |
# Distributed under the terms of the GNU General Public License v2 |
| 28 |
|
| 29 |
-EAPI=5 |
| 30 |
+EAPI=7 |
| 31 |
|
| 32 |
-PYTHON_COMPAT=( python2_7 ) |
| 33 |
+PYTHON_COMPAT=( python3_{6..9} ) |
| 34 |
|
| 35 |
inherit distutils-r1 |
| 36 |
|
| 37 |
@@ -17,8 +17,24 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
| 38 |
IUSE="" |
| 39 |
|
| 40 |
RDEPEND=" |
| 41 |
- sci-biology/pyfaidx[${PYTHON_USEDEP}] |
| 42 |
dev-python/simplejson[${PYTHON_USEDEP}] |
| 43 |
dev-python/argh[${PYTHON_USEDEP}] |
| 44 |
- dev-python/argcomplete[${PYTHON_USEDEP}]" |
| 45 |
+ dev-python/argcomplete[${PYTHON_USEDEP}] |
| 46 |
+ sci-biology/biopython[${PYTHON_USEDEP}] |
| 47 |
+ sci-biology/pybedtools[${PYTHON_USEDEP}] |
| 48 |
+ sci-biology/pyfaidx[${PYTHON_USEDEP}] |
| 49 |
+" |
| 50 |
DEPEND="${RDEPEND}" |
| 51 |
+ |
| 52 |
+python_prepare_all() { |
| 53 |
+ if use test; then |
| 54 |
+ sed -i -e "s:/tmp/gffutils-test:${T}:g" gffutils/test/test.py || die |
| 55 |
+ fi |
| 56 |
+ distutils-r1_python_prepare_all |
| 57 |
+} |
| 58 |
+ |
| 59 |
+distutils_enable_tests nose |
| 60 |
+python_test() { |
| 61 |
+ distutils_install_for_testing |
| 62 |
+ nosetests -v -x --with-doctest -a '!slow' || die |
| 63 |
+} |
| 64 |
|
| 65 |
diff --git a/sci-biology/gffutils/gffutils-0.8.7.1.ebuild b/sci-biology/gffutils/gffutils-0.8.7.1.ebuild |
| 66 |
index 787a5668a..333716f7a 100644 |
| 67 |
--- a/sci-biology/gffutils/gffutils-0.8.7.1.ebuild |
| 68 |
+++ b/sci-biology/gffutils/gffutils-0.8.7.1.ebuild |
| 69 |
@@ -1,9 +1,9 @@ |
| 70 |
-# Copyright 1999-2017 Gentoo Foundation |
| 71 |
+# Copyright 1999-2020 Gentoo Authors |
| 72 |
# Distributed under the terms of the GNU General Public License v2 |
| 73 |
|
| 74 |
-EAPI=5 |
| 75 |
+EAPI=7 |
| 76 |
|
| 77 |
-PYTHON_COMPAT=( python2_7 ) |
| 78 |
+PYTHON_COMPAT=( python3_{6..9} ) |
| 79 |
|
| 80 |
inherit distutils-r1 |
Archives