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commit: a2fff58ef4b54fde37926e16f080d7cd781d9f0a |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Mon Sep 21 13:56:02 2015 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Mon Sep 21 13:56:02 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a2fff58e |
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|
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Drop obsolete package Sources unavailable |
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|
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-chemistry/almost/ChangeLog | 21 --- |
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sci-chemistry/almost/almost-1.0.3-r2.ebuild | 67 -------- |
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sci-chemistry/almost/files/Makefile.patch | 44 ------ |
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sci-chemistry/almost/files/configure.patch | 226 -------------------------- |
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sci-chemistry/almost/files/configure2.patch | 235 ---------------------------- |
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sci-chemistry/almost/files/gcc-4.3.patch | 70 --------- |
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sci-chemistry/almost/metadata.xml | 9 -- |
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7 files changed, 672 deletions(-) |
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|
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diff --git a/sci-chemistry/almost/ChangeLog b/sci-chemistry/almost/ChangeLog |
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deleted file mode 100644 |
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index 206d8c1..0000000 |
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--- a/sci-chemistry/almost/ChangeLog |
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+++ /dev/null |
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@@ -1,21 +0,0 @@ |
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-# ChangeLog for sci-chemistry/almost |
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-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Id$ |
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- |
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- 10 Nov 2014; Justin Lecher <jlec@g.o> almost-1.0.3-r2.ebuild: |
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- Bump to EAPI=5 |
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- |
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-*almost-1.0.3-r1 (11 May 2009) |
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- |
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- 11 May 2009; Justin Lecher (jlec) <jlec@×××××××××.net> |
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- +almost-1.0.3-r1.ebuild: |
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- make use of boost-1.3.6 |
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- Use updated code from upstream |
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- |
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- 15 Feb 2009; justin Lecher (jlec) <jlec@×××××××××.net> |
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- Fixed installation of missing headers |
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- |
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- 07 Nov 2008; justin Lecher <jlec@×××××××××.net> +metadata.xml, |
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- +almost-1.0.3.ebuild: |
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- Setup sci-chemistry/almost |
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- |
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|
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diff --git a/sci-chemistry/almost/almost-1.0.3-r2.ebuild b/sci-chemistry/almost/almost-1.0.3-r2.ebuild |
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deleted file mode 100644 |
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index 0ea8c53..0000000 |
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--- a/sci-chemistry/almost/almost-1.0.3-r2.ebuild |
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+++ /dev/null |
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@@ -1,67 +0,0 @@ |
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-# Copyright 1999-2014 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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-# $Id$ |
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- |
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-EAPI=5 |
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- |
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-inherit autotools eutils flag-o-matic |
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- |
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-DATE="090822" |
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- |
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-DESCRIPTION="all atom molecular simulation toolkit" |
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-HOMEPAGE="http://www-almost.ch.cam.ac.uk/site" |
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-#SRC_URI="http://www-almost.ch.cam.ac.uk/site/downloads/${P}.tar.gz" |
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-## Upstream changes tarballs w/o revision bump so I host a copy |
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-SRC_URI="http://dev.gentooexperimental.org/~jlec/distfiles/${P}-${DATE}.tar.gz" |
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-LICENSE="GPL-2" |
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- |
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-SLOT="0" |
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-KEYWORDS="~amd64 ~x86" |
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- |
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-IUSE="" |
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-RDEPEND="" |
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- |
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-## dev-libs/boost-1.3.6, once it is in the tree soft masked |
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-## until then we use the shipped one |
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-# Upstream has to fix its code so that it compiles with mpicxx |
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-## Upstream only uses sys-cluster/mpich2, so we should first get this to work. |
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-#DEPEND="mpi? ( sys-cluster/mpich2 )" |
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-DEPEND="${RDEPEND}" |
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- |
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-RESTRICT="mirror" |
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- |
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-src_prepare(){ |
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- rm -rf ./include/almost/boost src/lib/iostreams || die |
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-# rm -rf ./include/almost/boost ./include/almost/boost_1_30 #src/lib/iostreams |
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- |
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- sed -e 's:boost boost_1_30::g' \ |
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- -i ./include/almost/Makefile.am || die |
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- |
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- epatch \ |
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- "${FILESDIR}"/configure2.patch \ |
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- "${FILESDIR}"/Makefile.patch |
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- |
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- sed \ |
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- -e '/include\/almost\/boost/d' \ |
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- -e '/include\/almost\/tinyxml/d' \ |
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- -i configure.in || die |
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- |
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-# find include \ |
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-# -name "*.h" \ |
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-# -exec sed 's:boost_1_30:boost:g' -i '{}' \; |
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- |
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- epatch "${FILESDIR}"/gcc-4.3.patch |
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- eautoreconf |
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-} |
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- |
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-src_compile(){ |
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- emake CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" -j1 |
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- |
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-} |
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- |
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-src_install() { |
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- default |
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- |
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- insinto /usr/include/${PN} |
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- doins {almost,config}.h |
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-} |
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|
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diff --git a/sci-chemistry/almost/files/Makefile.patch b/sci-chemistry/almost/files/Makefile.patch |
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deleted file mode 100644 |
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index cdaf0aa..0000000 |
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--- a/sci-chemistry/almost/files/Makefile.patch |
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+++ /dev/null |
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@@ -1,44 +0,0 @@ |
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---- src/Makefile.am 2008-06-06 01:15:31.000000000 +0200 |
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-+++ src/Makefile.am.new 2009-08-22 22:38:00.000000000 +0200 |
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-@@ -1,3 +1,3 @@ |
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- #SUBDIRS = #io param pdb molecules util moveset system forcefield zeta mpi dcdtools analysis modules tests |
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- |
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--SUBDIRS= lib tinyxml libxml forcefield examples tests |
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-+SUBDIRS= lib forcefield examples tests |
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---- src/lib/Makefile.am 2008-07-17 17:57:14.000000000 +0200 |
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-+++ src/lib/Makefile.am.new 2009-08-23 20:45:00.000000000 +0200 |
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-@@ -1,6 +1,7 @@ |
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- INCLUDES = -I../../include/almost -I../rose -I../zeta/ -Imodules |
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- SUBDIRS=modules |
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- lib_LIBRARIES=libAlm.a |
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-+libAlm_la_LIBADD=libboost_iostreams.a |
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- REGEXSOURCES= regex/c_regex_traits.cpp \ |
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- regex/cpp_regex_traits.cpp \ |
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- regex/cregex.cpp \ |
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-@@ -19,15 +20,6 @@ |
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- regex/wide_posix_api.cpp \ |
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- regex/winstances.cpp |
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- |
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--IOSTREAMSSOURCES = iostreams/bzip2.cpp \ |
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-- iostreams/file_descriptor.cpp \ |
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-- iostreams/mapped_file.cpp \ |
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-- iostreams/zlib.cpp |
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-- |
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--IOSOURCES = io/formostream.cpp |
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-- |
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-- |
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-- |
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- PBDSOURCES = pdb/pdbatomline.cpp \ |
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- pdb/pdbauthorline.cpp \ |
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- pdb/pdbcompndline.cpp \ |
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-@@ -208,8 +200,8 @@ |
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- |
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- |
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- |
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--nodist_libAlm_a_SOURCES= $(REGEXSOURCES) $(PBDSOURCES) $(IOSTREAMSSOURCES) \ |
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-- $(IOSOURCES) $(MDBSOUCES) $(MOLECULESSOURCES) \ |
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-+nodist_libAlm_a_SOURCES= $(REGEXSOURCES) $(PBDSOURCES) \ |
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-+ $(MDBSOUCES) $(MOLECULESSOURCES) \ |
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- $(MOVESETSOURCES) $(DCDTOOLSSOURCES) $(ALGOSOURCES) \ |
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- $(MODSOURCES) $(CODE) $(ZETASOURCES) $(CHESHIRESOURCES) |
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- |
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|
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diff --git a/sci-chemistry/almost/files/configure.patch b/sci-chemistry/almost/files/configure.patch |
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deleted file mode 100644 |
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index c8e2719..0000000 |
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--- a/sci-chemistry/almost/files/configure.patch |
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+++ /dev/null |
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@@ -1,226 +0,0 @@ |
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---- configure.in 2008-06-18 11:53:20.000000000 +0200 |
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-+++ configure.in.new 2009-08-22 22:07:07.000000000 +0200 |
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-@@ -125,10 +125,6 @@ |
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- fi |
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- |
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- |
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--#C and CPPFLAFS |
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--CFLAGS="-O9 -ffast-math -fomit-frame-pointer" |
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--CXXFLAGS="-O9 -ffast-math" |
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-- |
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- #alm_sse |
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- mkasm=false |
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- case "${host-cpu}" in |
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-@@ -224,203 +220,6 @@ |
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- version.h |
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- Makefile |
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- include/almost/algorithm/Makefile |
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-- include/almost/boost/algorithm/Makefile |
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-- include/almost/boost/algorithm/string/detail/Makefile |
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-- include/almost/boost/algorithm/string/Makefile |
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-- include/almost/boost/algorithm/string/std/Makefile |
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-- include/almost/boost/archive/detail/Makefile |
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-- include/almost/boost/archive/impl/Makefile |
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-- include/almost/boost/archive/iterators/Makefile |
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-- include/almost/boost/archive/Makefile |
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-- include/almost/boost/assign/Makefile |
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-- include/almost/boost/assign/std/Makefile |
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-- include/almost/boost/bind/Makefile |
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-- include/almost/boost/compatibility/cpp_c_headers/Makefile |
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-- include/almost/boost/compatibility/Makefile |
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-- include/almost/boost/config/abi/Makefile |
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-- include/almost/boost/config/compiler/Makefile |
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-- include/almost/boost/config/Makefile |
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-- include/almost/boost/config/platform/Makefile |
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-- include/almost/boost/config/stdlib/Makefile |
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-- include/almost/boost/date_time/gregorian/Makefile |
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-- include/almost/boost/date_time/local_time/Makefile |
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-- include/almost/boost/date_time/Makefile |
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-- include/almost/boost/date_time/posix_time/Makefile |
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-- include/almost/boost/detail/Makefile |
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-- include/almost/boost/dynamic_bitset/Makefile |
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-- include/almost/boost/filesystem/Makefile |
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-- include/almost/boost/format/detail/Makefile |
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-- include/almost/boost/format/Makefile |
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-- include/almost/boost/function/detail/Makefile |
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-- include/almost/boost/function/Makefile |
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-- include/almost/boost/functional/detail/Makefile |
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-- include/almost/boost/functional/hash/Makefile |
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-- include/almost/boost/functional/Makefile |
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-- include/almost/boost/graph/detail/Makefile |
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-- include/almost/boost/graph/Makefile |
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-- include/almost/boost/integer/Makefile |
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-- include/almost/boost/io/Makefile |
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-- include/almost/boost/iostreams/detail/adapter/Makefile |
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-- include/almost/boost/iostreams/detail/broken_overload_resolution/Makefile |
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-- include/almost/boost/iostreams/detail/config/Makefile |
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-- include/almost/boost/iostreams/detail/Makefile |
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-- include/almost/boost/iostreams/detail/streambuf/Makefile |
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-- include/almost/boost/iostreams/detail/vc6/Makefile |
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-- include/almost/boost/iostreams/device/Makefile |
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-- include/almost/boost/iostreams/filter/Makefile |
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-- include/almost/boost/iostreams/Makefile |
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-- include/almost/boost/iterator/detail/Makefile |
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-- include/almost/boost/iterator/Makefile |
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-- include/almost/boost/lambda/detail/Makefile |
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-- include/almost/boost/lambda/Makefile |
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-- include/almost/boost/logic/Makefile |
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-- include/almost/boost/Makefile |
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-- include/almost/boost/math/Makefile |
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-- include/almost/boost/math/special_functions/Makefile |
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-- include/almost/boost/mpl/aux_/config/Makefile |
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-- include/almost/boost/mpl/aux_/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/bcc/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/bcc551/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/dmc/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/gcc/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/msvc60/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/msvc70/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/mwcw/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/no_ctps/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/no_ttp/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessed/plain/Makefile |
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-- include/almost/boost/mpl/aux_/preprocessor/Makefile |
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-- include/almost/boost/mpl/aux_/range_c/Makefile |
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-- include/almost/boost/mpl/aux_/test/Makefile |
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-- include/almost/boost/mpl/limits/Makefile |
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-- include/almost/boost/mpl/list/aux_/Makefile |
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-- include/almost/boost/mpl/list/aux_/preprocessed/Makefile |
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-- include/almost/boost/mpl/list/aux_/preprocessed/plain/Makefile |
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-- include/almost/boost/mpl/list/Makefile |
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-- include/almost/boost/mpl/Makefile |
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-- include/almost/boost/mpl/map/aux_/Makefile |
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-- include/almost/boost/mpl/map/aux_/preprocessed/Makefile |
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-- include/almost/boost/mpl/map/aux_/preprocessed/no_ctps/Makefile |
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-- include/almost/boost/mpl/map/aux_/preprocessed/plain/Makefile |
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-- include/almost/boost/mpl/map/aux_/preprocessed/typeof_based/Makefile |
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-- include/almost/boost/mpl/map/Makefile |
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-- include/almost/boost/mpl/math/Makefile |
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-- include/almost/boost/mpl/multiset/aux_/Makefile |
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-- include/almost/boost/mpl/multiset/Makefile |
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-- include/almost/boost/mpl/set/aux_/Makefile |
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-- include/almost/boost/mpl/set/aux_/preprocessed/Makefile |
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-- include/almost/boost/mpl/set/aux_/preprocessed/plain/Makefile |
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-- include/almost/boost/mpl/set/Makefile |
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-- include/almost/boost/mpl/vector/aux_/Makefile |
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-- include/almost/boost/mpl/vector/aux_/preprocessed/Makefile |
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-- include/almost/boost/mpl/vector/aux_/preprocessed/no_ctps/Makefile |
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-- include/almost/boost/mpl/vector/aux_/preprocessed/plain/Makefile |
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-- include/almost/boost/mpl/vector/aux_/preprocessed/typeof_based/Makefile |
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-- include/almost/boost/mpl/vector/Makefile |
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-- include/almost/boost/multi_array/Makefile |
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-- include/almost/boost/multi_index/detail/Makefile |
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-- include/almost/boost/multi_index/Makefile |
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-- include/almost/boost/numeric/conversion/detail/Makefile |
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-- include/almost/boost/numeric/conversion/Makefile |
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-- include/almost/boost/numeric/interval/compare/Makefile |
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-- include/almost/boost/numeric/interval/detail/Makefile |
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-- include/almost/boost/numeric/interval/ext/Makefile |
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-- include/almost/boost/numeric/interval/Makefile |
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-- include/almost/boost/numeric/Makefile |
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-- include/almost/boost/numeric/ublas/detail/Makefile |
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-- include/almost/boost/numeric/ublas/Makefile |
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-- include/almost/boost/optional/Makefile |
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-- include/almost/boost/parameter/aux_/Makefile |
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-- include/almost/boost/parameter/Makefile |
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-- include/almost/boost/pending/detail/Makefile |
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-- include/almost/boost/pending/Makefile |
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-- include/almost/boost/pool/detail/Makefile |
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-- include/almost/boost/pool/Makefile |
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-- include/almost/boost/preprocessor/arithmetic/detail/Makefile |
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-- include/almost/boost/preprocessor/arithmetic/Makefile |
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-- include/almost/boost/preprocessor/array/Makefile |
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-- include/almost/boost/preprocessor/comparison/Makefile |
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-- include/almost/boost/preprocessor/config/Makefile |
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-- include/almost/boost/preprocessor/control/detail/dmc/Makefile |
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-- include/almost/boost/preprocessor/control/detail/edg/Makefile |
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-- include/almost/boost/preprocessor/control/detail/Makefile |
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-- include/almost/boost/preprocessor/control/detail/msvc/Makefile |
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-- include/almost/boost/preprocessor/control/Makefile |
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-- include/almost/boost/preprocessor/debug/Makefile |
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-- include/almost/boost/preprocessor/detail/dmc/Makefile |
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-- include/almost/boost/preprocessor/detail/Makefile |
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-- include/almost/boost/preprocessor/facilities/Makefile |
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-- include/almost/boost/preprocessor/iteration/detail/bounds/Makefile |
| 325 |
-- include/almost/boost/preprocessor/iteration/detail/iter/Makefile |
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-- include/almost/boost/preprocessor/iteration/detail/Makefile |
| 327 |
-- include/almost/boost/preprocessor/iteration/Makefile |
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-- include/almost/boost/preprocessor/list/detail/dmc/Makefile |
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-- include/almost/boost/preprocessor/list/detail/edg/Makefile |
| 330 |
-- include/almost/boost/preprocessor/list/detail/Makefile |
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-- include/almost/boost/preprocessor/list/Makefile |
| 332 |
-- include/almost/boost/preprocessor/logical/Makefile |
| 333 |
-- include/almost/boost/preprocessor/Makefile |
| 334 |
-- include/almost/boost/preprocessor/punctuation/Makefile |
| 335 |
-- include/almost/boost/preprocessor/repetition/detail/dmc/Makefile |
| 336 |
-- include/almost/boost/preprocessor/repetition/detail/edg/Makefile |
| 337 |
-- include/almost/boost/preprocessor/repetition/detail/Makefile |
| 338 |
-- include/almost/boost/preprocessor/repetition/detail/msvc/Makefile |
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-- include/almost/boost/preprocessor/repetition/Makefile |
| 340 |
-- include/almost/boost/preprocessor/selection/Makefile |
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-- include/almost/boost/preprocessor/seq/detail/Makefile |
| 342 |
-- include/almost/boost/preprocessor/seq/Makefile |
| 343 |
-- include/almost/boost/preprocessor/slot/detail/Makefile |
| 344 |
-- include/almost/boost/preprocessor/slot/Makefile |
| 345 |
-- include/almost/boost/preprocessor/tuple/Makefile |
| 346 |
-- include/almost/boost/program_options/detail/Makefile |
| 347 |
-- include/almost/boost/program_options/Makefile |
| 348 |
-- include/almost/boost/ptr_container/detail/Makefile |
| 349 |
-- include/almost/boost/ptr_container/Makefile |
| 350 |
-- include/almost/boost/python/converter/Makefile |
| 351 |
-- include/almost/boost/python/detail/Makefile |
| 352 |
-- include/almost/boost/python/Makefile |
| 353 |
-- include/almost/boost/python/object/Makefile |
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-- include/almost/boost/python/suite/indexing/detail/Makefile |
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-- include/almost/boost/python/suite/indexing/Makefile |
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-- include/almost/boost/python/suite/Makefile |
| 357 |
-- include/almost/boost/random/detail/Makefile |
| 358 |
-- include/almost/boost/random/Makefile |
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-- include/almost/boost/range/detail/Makefile |
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-- include/almost/boost/range/detail/mfc/Makefile |
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-- include/almost/boost/range/detail/vc6/Makefile |
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-- include/almost/boost/range/Makefile |
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-- include/almost/boost/regex/config/Makefile |
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-- include/almost/boost/regex/Makefile |
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-- include/almost/boost/regex/pending/Makefile |
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-- include/almost/boost/regex/v4/Makefile |
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-- include/almost/boost/serialization/detail/Makefile |
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-- include/almost/boost/serialization/Makefile |
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-- include/almost/boost/signals/detail/Makefile |
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-- include/almost/boost/signals/Makefile |
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-- include/almost/boost/thread/detail/Makefile |
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-- include/almost/boost/thread/Makefile |
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-- include/almost/boost/tuple/detail/Makefile |
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-- include/almost/boost/tuple/Makefile |
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-- include/almost/boost/type_traits/detail/Makefile |
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-- include/almost/boost/type_traits/Makefile |
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-- include/almost/boost/utility/detail/Makefile |
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-- include/almost/boost/utility/Makefile |
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-- include/almost/boost/variant/detail/Makefile |
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-- include/almost/boost/variant/Makefile |
| 381 |
-- include/almost/boost/wave/cpplexer/Makefile |
| 382 |
-- include/almost/boost/wave/cpplexer/re2clex/Makefile |
| 383 |
-- include/almost/boost/wave/grammars/Makefile |
| 384 |
-- include/almost/boost/wave/Makefile |
| 385 |
-- include/almost/boost/wave/util/Makefile |
| 386 |
-- include/almost/boost_1_30/config/compiler/Makefile |
| 387 |
-- include/almost/boost_1_30/config/Makefile |
| 388 |
-- include/almost/boost_1_30/config/platform/Makefile |
| 389 |
-- include/almost/boost_1_30/config/stdlib/Makefile |
| 390 |
-- include/almost/boost_1_30/detail/Makefile |
| 391 |
-- include/almost/boost_1_30/Makefile |
| 392 |
-- include/almost/boost_1_30/random/detail/Makefile |
| 393 |
-- include/almost/boost_1_30/random/Makefile |
| 394 |
- include/almost/coormanager/Makefile |
| 395 |
- include/almost/dyna/Makefile |
| 396 |
- include/almost/mcf/Makefile |
| 397 |
-@@ -470,8 +269,6 @@ |
| 398 |
- src/lib/Makefile |
| 399 |
- src/lib/modules/Makefile |
| 400 |
- src/Makefile |
| 401 |
-- src/tinyxml/Makefile |
| 402 |
-- src/libxml/Makefile |
| 403 |
- src/forcefield/Makefile |
| 404 |
- src/examples/Makefile |
| 405 |
- src/tests/Makefile |
| 406 |
|
| 407 |
diff --git a/sci-chemistry/almost/files/configure2.patch b/sci-chemistry/almost/files/configure2.patch |
| 408 |
deleted file mode 100644 |
| 409 |
index bf598ae..0000000 |
| 410 |
--- a/sci-chemistry/almost/files/configure2.patch |
| 411 |
+++ /dev/null |
| 412 |
@@ -1,235 +0,0 @@ |
| 413 |
---- configure.in 2008-06-18 11:53:20.000000000 +0200 |
| 414 |
-+++ configure.in.new 2009-08-23 22:10:20.000000000 +0200 |
| 415 |
-@@ -124,11 +124,6 @@ |
| 416 |
- echo Constraint disabled value $ |
| 417 |
- fi |
| 418 |
- |
| 419 |
-- |
| 420 |
--#C and CPPFLAFS |
| 421 |
--CFLAGS="-O9 -ffast-math -fomit-frame-pointer" |
| 422 |
--CXXFLAGS="-O9 -ffast-math" |
| 423 |
-- |
| 424 |
- #alm_sse |
| 425 |
- mkasm=false |
| 426 |
- case "${host-cpu}" in |
| 427 |
-@@ -224,195 +219,6 @@ |
| 428 |
- version.h |
| 429 |
- Makefile |
| 430 |
- include/almost/algorithm/Makefile |
| 431 |
-- include/almost/boost/algorithm/Makefile |
| 432 |
-- include/almost/boost/algorithm/string/detail/Makefile |
| 433 |
-- include/almost/boost/algorithm/string/Makefile |
| 434 |
-- include/almost/boost/algorithm/string/std/Makefile |
| 435 |
-- include/almost/boost/archive/detail/Makefile |
| 436 |
-- include/almost/boost/archive/impl/Makefile |
| 437 |
-- include/almost/boost/archive/iterators/Makefile |
| 438 |
-- include/almost/boost/archive/Makefile |
| 439 |
-- include/almost/boost/assign/Makefile |
| 440 |
-- include/almost/boost/assign/std/Makefile |
| 441 |
-- include/almost/boost/bind/Makefile |
| 442 |
-- include/almost/boost/compatibility/cpp_c_headers/Makefile |
| 443 |
-- include/almost/boost/compatibility/Makefile |
| 444 |
-- include/almost/boost/config/abi/Makefile |
| 445 |
-- include/almost/boost/config/compiler/Makefile |
| 446 |
-- include/almost/boost/config/Makefile |
| 447 |
-- include/almost/boost/config/platform/Makefile |
| 448 |
-- include/almost/boost/config/stdlib/Makefile |
| 449 |
-- include/almost/boost/date_time/gregorian/Makefile |
| 450 |
-- include/almost/boost/date_time/local_time/Makefile |
| 451 |
-- include/almost/boost/date_time/Makefile |
| 452 |
-- include/almost/boost/date_time/posix_time/Makefile |
| 453 |
-- include/almost/boost/detail/Makefile |
| 454 |
-- include/almost/boost/dynamic_bitset/Makefile |
| 455 |
-- include/almost/boost/filesystem/Makefile |
| 456 |
-- include/almost/boost/format/detail/Makefile |
| 457 |
-- include/almost/boost/format/Makefile |
| 458 |
-- include/almost/boost/function/detail/Makefile |
| 459 |
-- include/almost/boost/function/Makefile |
| 460 |
-- include/almost/boost/functional/detail/Makefile |
| 461 |
-- include/almost/boost/functional/hash/Makefile |
| 462 |
-- include/almost/boost/functional/Makefile |
| 463 |
-- include/almost/boost/graph/detail/Makefile |
| 464 |
-- include/almost/boost/graph/Makefile |
| 465 |
-- include/almost/boost/integer/Makefile |
| 466 |
-- include/almost/boost/io/Makefile |
| 467 |
-- include/almost/boost/iostreams/detail/adapter/Makefile |
| 468 |
-- include/almost/boost/iostreams/detail/broken_overload_resolution/Makefile |
| 469 |
-- include/almost/boost/iostreams/detail/config/Makefile |
| 470 |
-- include/almost/boost/iostreams/detail/Makefile |
| 471 |
-- include/almost/boost/iostreams/detail/streambuf/Makefile |
| 472 |
-- include/almost/boost/iostreams/detail/vc6/Makefile |
| 473 |
-- include/almost/boost/iostreams/device/Makefile |
| 474 |
-- include/almost/boost/iostreams/filter/Makefile |
| 475 |
-- include/almost/boost/iostreams/Makefile |
| 476 |
-- include/almost/boost/iterator/detail/Makefile |
| 477 |
-- include/almost/boost/iterator/Makefile |
| 478 |
-- include/almost/boost/lambda/detail/Makefile |
| 479 |
-- include/almost/boost/lambda/Makefile |
| 480 |
-- include/almost/boost/logic/Makefile |
| 481 |
-- include/almost/boost/Makefile |
| 482 |
-- include/almost/boost/math/Makefile |
| 483 |
-- include/almost/boost/math/special_functions/Makefile |
| 484 |
-- include/almost/boost/mpl/aux_/config/Makefile |
| 485 |
-- include/almost/boost/mpl/aux_/Makefile |
| 486 |
-- include/almost/boost/mpl/aux_/preprocessed/bcc/Makefile |
| 487 |
-- include/almost/boost/mpl/aux_/preprocessed/bcc551/Makefile |
| 488 |
-- include/almost/boost/mpl/aux_/preprocessed/dmc/Makefile |
| 489 |
-- include/almost/boost/mpl/aux_/preprocessed/gcc/Makefile |
| 490 |
-- include/almost/boost/mpl/aux_/preprocessed/Makefile |
| 491 |
-- include/almost/boost/mpl/aux_/preprocessed/msvc60/Makefile |
| 492 |
-- include/almost/boost/mpl/aux_/preprocessed/msvc70/Makefile |
| 493 |
-- include/almost/boost/mpl/aux_/preprocessed/mwcw/Makefile |
| 494 |
-- include/almost/boost/mpl/aux_/preprocessed/no_ctps/Makefile |
| 495 |
-- include/almost/boost/mpl/aux_/preprocessed/no_ttp/Makefile |
| 496 |
-- include/almost/boost/mpl/aux_/preprocessed/plain/Makefile |
| 497 |
-- include/almost/boost/mpl/aux_/preprocessor/Makefile |
| 498 |
-- include/almost/boost/mpl/aux_/range_c/Makefile |
| 499 |
-- include/almost/boost/mpl/aux_/test/Makefile |
| 500 |
-- include/almost/boost/mpl/limits/Makefile |
| 501 |
-- include/almost/boost/mpl/list/aux_/Makefile |
| 502 |
-- include/almost/boost/mpl/list/aux_/preprocessed/Makefile |
| 503 |
-- include/almost/boost/mpl/list/aux_/preprocessed/plain/Makefile |
| 504 |
-- include/almost/boost/mpl/list/Makefile |
| 505 |
-- include/almost/boost/mpl/Makefile |
| 506 |
-- include/almost/boost/mpl/map/aux_/Makefile |
| 507 |
-- include/almost/boost/mpl/map/aux_/preprocessed/Makefile |
| 508 |
-- include/almost/boost/mpl/map/aux_/preprocessed/no_ctps/Makefile |
| 509 |
-- include/almost/boost/mpl/map/aux_/preprocessed/plain/Makefile |
| 510 |
-- include/almost/boost/mpl/map/aux_/preprocessed/typeof_based/Makefile |
| 511 |
-- include/almost/boost/mpl/map/Makefile |
| 512 |
-- include/almost/boost/mpl/math/Makefile |
| 513 |
-- include/almost/boost/mpl/multiset/aux_/Makefile |
| 514 |
-- include/almost/boost/mpl/multiset/Makefile |
| 515 |
-- include/almost/boost/mpl/set/aux_/Makefile |
| 516 |
-- include/almost/boost/mpl/set/aux_/preprocessed/Makefile |
| 517 |
-- include/almost/boost/mpl/set/aux_/preprocessed/plain/Makefile |
| 518 |
-- include/almost/boost/mpl/set/Makefile |
| 519 |
-- include/almost/boost/mpl/vector/aux_/Makefile |
| 520 |
-- include/almost/boost/mpl/vector/aux_/preprocessed/Makefile |
| 521 |
-- include/almost/boost/mpl/vector/aux_/preprocessed/no_ctps/Makefile |
| 522 |
-- include/almost/boost/mpl/vector/aux_/preprocessed/plain/Makefile |
| 523 |
-- include/almost/boost/mpl/vector/aux_/preprocessed/typeof_based/Makefile |
| 524 |
-- include/almost/boost/mpl/vector/Makefile |
| 525 |
-- include/almost/boost/multi_array/Makefile |
| 526 |
-- include/almost/boost/multi_index/detail/Makefile |
| 527 |
-- include/almost/boost/multi_index/Makefile |
| 528 |
-- include/almost/boost/numeric/conversion/detail/Makefile |
| 529 |
-- include/almost/boost/numeric/conversion/Makefile |
| 530 |
-- include/almost/boost/numeric/interval/compare/Makefile |
| 531 |
-- include/almost/boost/numeric/interval/detail/Makefile |
| 532 |
-- include/almost/boost/numeric/interval/ext/Makefile |
| 533 |
-- include/almost/boost/numeric/interval/Makefile |
| 534 |
-- include/almost/boost/numeric/Makefile |
| 535 |
-- include/almost/boost/numeric/ublas/detail/Makefile |
| 536 |
-- include/almost/boost/numeric/ublas/Makefile |
| 537 |
-- include/almost/boost/optional/Makefile |
| 538 |
-- include/almost/boost/parameter/aux_/Makefile |
| 539 |
-- include/almost/boost/parameter/Makefile |
| 540 |
-- include/almost/boost/pending/detail/Makefile |
| 541 |
-- include/almost/boost/pending/Makefile |
| 542 |
-- include/almost/boost/pool/detail/Makefile |
| 543 |
-- include/almost/boost/pool/Makefile |
| 544 |
-- include/almost/boost/preprocessor/arithmetic/detail/Makefile |
| 545 |
-- include/almost/boost/preprocessor/arithmetic/Makefile |
| 546 |
-- include/almost/boost/preprocessor/array/Makefile |
| 547 |
-- include/almost/boost/preprocessor/comparison/Makefile |
| 548 |
-- include/almost/boost/preprocessor/config/Makefile |
| 549 |
-- include/almost/boost/preprocessor/control/detail/dmc/Makefile |
| 550 |
-- include/almost/boost/preprocessor/control/detail/edg/Makefile |
| 551 |
-- include/almost/boost/preprocessor/control/detail/Makefile |
| 552 |
-- include/almost/boost/preprocessor/control/detail/msvc/Makefile |
| 553 |
-- include/almost/boost/preprocessor/control/Makefile |
| 554 |
-- include/almost/boost/preprocessor/debug/Makefile |
| 555 |
-- include/almost/boost/preprocessor/detail/dmc/Makefile |
| 556 |
-- include/almost/boost/preprocessor/detail/Makefile |
| 557 |
-- include/almost/boost/preprocessor/facilities/Makefile |
| 558 |
-- include/almost/boost/preprocessor/iteration/detail/bounds/Makefile |
| 559 |
-- include/almost/boost/preprocessor/iteration/detail/iter/Makefile |
| 560 |
-- include/almost/boost/preprocessor/iteration/detail/Makefile |
| 561 |
-- include/almost/boost/preprocessor/iteration/Makefile |
| 562 |
-- include/almost/boost/preprocessor/list/detail/dmc/Makefile |
| 563 |
-- include/almost/boost/preprocessor/list/detail/edg/Makefile |
| 564 |
-- include/almost/boost/preprocessor/list/detail/Makefile |
| 565 |
-- include/almost/boost/preprocessor/list/Makefile |
| 566 |
-- include/almost/boost/preprocessor/logical/Makefile |
| 567 |
-- include/almost/boost/preprocessor/Makefile |
| 568 |
-- include/almost/boost/preprocessor/punctuation/Makefile |
| 569 |
-- include/almost/boost/preprocessor/repetition/detail/dmc/Makefile |
| 570 |
-- include/almost/boost/preprocessor/repetition/detail/edg/Makefile |
| 571 |
-- include/almost/boost/preprocessor/repetition/detail/Makefile |
| 572 |
-- include/almost/boost/preprocessor/repetition/detail/msvc/Makefile |
| 573 |
-- include/almost/boost/preprocessor/repetition/Makefile |
| 574 |
-- include/almost/boost/preprocessor/selection/Makefile |
| 575 |
-- include/almost/boost/preprocessor/seq/detail/Makefile |
| 576 |
-- include/almost/boost/preprocessor/seq/Makefile |
| 577 |
-- include/almost/boost/preprocessor/slot/detail/Makefile |
| 578 |
-- include/almost/boost/preprocessor/slot/Makefile |
| 579 |
-- include/almost/boost/preprocessor/tuple/Makefile |
| 580 |
-- include/almost/boost/program_options/detail/Makefile |
| 581 |
-- include/almost/boost/program_options/Makefile |
| 582 |
-- include/almost/boost/ptr_container/detail/Makefile |
| 583 |
-- include/almost/boost/ptr_container/Makefile |
| 584 |
-- include/almost/boost/python/converter/Makefile |
| 585 |
-- include/almost/boost/python/detail/Makefile |
| 586 |
-- include/almost/boost/python/Makefile |
| 587 |
-- include/almost/boost/python/object/Makefile |
| 588 |
-- include/almost/boost/python/suite/indexing/detail/Makefile |
| 589 |
-- include/almost/boost/python/suite/indexing/Makefile |
| 590 |
-- include/almost/boost/python/suite/Makefile |
| 591 |
-- include/almost/boost/random/detail/Makefile |
| 592 |
-- include/almost/boost/random/Makefile |
| 593 |
-- include/almost/boost/range/detail/Makefile |
| 594 |
-- include/almost/boost/range/detail/mfc/Makefile |
| 595 |
-- include/almost/boost/range/detail/vc6/Makefile |
| 596 |
-- include/almost/boost/range/Makefile |
| 597 |
-- include/almost/boost/regex/config/Makefile |
| 598 |
-- include/almost/boost/regex/Makefile |
| 599 |
-- include/almost/boost/regex/pending/Makefile |
| 600 |
-- include/almost/boost/regex/v4/Makefile |
| 601 |
-- include/almost/boost/serialization/detail/Makefile |
| 602 |
-- include/almost/boost/serialization/Makefile |
| 603 |
-- include/almost/boost/signals/detail/Makefile |
| 604 |
-- include/almost/boost/signals/Makefile |
| 605 |
-- include/almost/boost/thread/detail/Makefile |
| 606 |
-- include/almost/boost/thread/Makefile |
| 607 |
-- include/almost/boost/tuple/detail/Makefile |
| 608 |
-- include/almost/boost/tuple/Makefile |
| 609 |
-- include/almost/boost/type_traits/detail/Makefile |
| 610 |
-- include/almost/boost/type_traits/Makefile |
| 611 |
-- include/almost/boost/utility/detail/Makefile |
| 612 |
-- include/almost/boost/utility/Makefile |
| 613 |
-- include/almost/boost/variant/detail/Makefile |
| 614 |
-- include/almost/boost/variant/Makefile |
| 615 |
-- include/almost/boost/wave/cpplexer/Makefile |
| 616 |
-- include/almost/boost/wave/cpplexer/re2clex/Makefile |
| 617 |
-- include/almost/boost/wave/grammars/Makefile |
| 618 |
-- include/almost/boost/wave/Makefile |
| 619 |
-- include/almost/boost/wave/util/Makefile |
| 620 |
- include/almost/boost_1_30/config/compiler/Makefile |
| 621 |
- include/almost/boost_1_30/config/Makefile |
| 622 |
- include/almost/boost_1_30/config/platform/Makefile |
| 623 |
-@@ -441,7 +247,6 @@ |
| 624 |
- include/almost/io/Makefile |
| 625 |
- include/almost/kernel/Makefile |
| 626 |
- include/almost/kernel/scratch/Makefile |
| 627 |
-- include/almost/libxml/Makefile |
| 628 |
- include/almost/Makefile |
| 629 |
- include/almost/mbmd/Makefile |
| 630 |
- include/almost/misc/Makefile |
| 631 |
-@@ -460,7 +265,6 @@ |
| 632 |
- include/almost/nmr/Makefile |
| 633 |
- include/almost/tmd/Makefile |
| 634 |
- include/almost/template/Makefile |
| 635 |
-- include/almost/tinyxml/Makefile |
| 636 |
- include/almost/types/Makefile |
| 637 |
- include/almost/zeta/Makefile |
| 638 |
- include/Makefile |
| 639 |
-@@ -470,8 +274,6 @@ |
| 640 |
- src/lib/Makefile |
| 641 |
- src/lib/modules/Makefile |
| 642 |
- src/Makefile |
| 643 |
-- src/tinyxml/Makefile |
| 644 |
-- src/libxml/Makefile |
| 645 |
- src/forcefield/Makefile |
| 646 |
- src/examples/Makefile |
| 647 |
- src/tests/Makefile |
| 648 |
|
| 649 |
diff --git a/sci-chemistry/almost/files/gcc-4.3.patch b/sci-chemistry/almost/files/gcc-4.3.patch |
| 650 |
deleted file mode 100644 |
| 651 |
index 4b27ee1..0000000 |
| 652 |
--- a/sci-chemistry/almost/files/gcc-4.3.patch |
| 653 |
+++ /dev/null |
| 654 |
@@ -1,70 +0,0 @@ |
| 655 |
-#--- src/lib/modules/shx/shxmalloc.cpp.orig 2008-11-07 11:41:35.000000000 +0100 |
| 656 |
-#+++ src/lib/modules/shx/shxmalloc.cpp 2008-11-07 11:41:43.000000000 +0100 |
| 657 |
-#@@ -15,6 +15,7 @@ |
| 658 |
-# ***************************************************************************/ |
| 659 |
- |
| 660 |
-# #include <vector> |
| 661 |
-#+#include <cstdlib> |
| 662 |
-# |
| 663 |
-# using namespace std; |
| 664 |
-# |
| 665 |
-#--- ./include/almost/forcefield/spec.h.orig 2008-11-07 11:57:47.000000000 +0100 |
| 666 |
-#+++ ./include/almost/forcefield/spec.h 2008-11-07 11:58:35.000000000 +0100 |
| 667 |
-#@@ -20,6 +20,7 @@ |
| 668 |
-# #define __SPEC__ |
| 669 |
-# |
| 670 |
-# #include <almost.h> |
| 671 |
-#+#include <typeinfo> |
| 672 |
-# namespace Almost { |
| 673 |
-# |
| 674 |
-# struct None{}; |
| 675 |
---- include/almost/cheshire/pssi.h.orig 2008-11-07 12:47:11.000000000 +0100 |
| 676 |
-+++ include/almost/cheshire/pssi.h 2008-11-07 12:47:24.000000000 +0100 |
| 677 |
-@@ -22,6 +22,7 @@ |
| 678 |
- #include <almost.h> |
| 679 |
- #include <sstream> |
| 680 |
- #include <iterator> |
| 681 |
-+#include <cstring> |
| 682 |
- namespace Almost { |
| 683 |
- |
| 684 |
- class PSSI { |
| 685 |
---- src/lib/algorithm/topos.cpp.orig 2008-11-07 13:18:10.000000000 +0100 |
| 686 |
-+++ src/lib/algorithm/topos.cpp 2008-11-07 13:18:27.000000000 +0100 |
| 687 |
-@@ -27,6 +27,7 @@ |
| 688 |
- #include <cmath> |
| 689 |
- #include <cheshire/topos.h> |
| 690 |
- #include <cheshire/topos_rc.h> |
| 691 |
-+#include <cstring> |
| 692 |
- namespace Almost { |
| 693 |
- |
| 694 |
- namespace Topos { |
| 695 |
---- include/almost/rose/rosedb.h.orig 2008-11-07 12:26:56.000000000 +0100 |
| 696 |
-+++ include/almost/rose/rosedb.h 2008-11-07 12:27:04.000000000 +0100 |
| 697 |
-@@ -21,6 +21,7 @@ |
| 698 |
- |
| 699 |
- #include <almost.h> |
| 700 |
- #include <iterator> |
| 701 |
-+#include <cstring> |
| 702 |
- |
| 703 |
- namespace Utils { |
| 704 |
- inline int toinda(char c){ |
| 705 |
---- src/lib/zeta/zobj.cpp 2008-07-22 01:31:34.000000000 +0200 |
| 706 |
-+++ src/lib/zeta/zobj.cpp.new 2008-11-23 19:19:26.000000000 +0100 |
| 707 |
-@@ -2,6 +2,7 @@ |
| 708 |
- #include <zeta/zobj.h> |
| 709 |
- #include <zeta/zobj.hpp> |
| 710 |
- #include <zeta/zextinstance.h> |
| 711 |
-+#include <cstring> |
| 712 |
- |
| 713 |
- |
| 714 |
- ZObj * FactoryTrampolin::bind(ZObj * o){ |
| 715 |
---- ./src/lib/modules/shx/shxmalloc.cpp 2008-05-07 17:06:49.000000000 +0200 |
| 716 |
-+++ ./src/lib/modules/shx/shxmalloc.cpp.new 2009-08-22 21:31:55.000000000 +0200 |
| 717 |
-@@ -15,6 +15,7 @@ |
| 718 |
- ***************************************************************************/ |
| 719 |
- |
| 720 |
- #include <vector> |
| 721 |
-+#include <cstdlib> |
| 722 |
- |
| 723 |
- using namespace std; |
| 724 |
- |
| 725 |
|
| 726 |
diff --git a/sci-chemistry/almost/metadata.xml b/sci-chemistry/almost/metadata.xml |
| 727 |
deleted file mode 100644 |
| 728 |
index b3618ba..0000000 |
| 729 |
--- a/sci-chemistry/almost/metadata.xml |
| 730 |
+++ /dev/null |
| 731 |
@@ -1,9 +0,0 @@ |
| 732 |
-<?xml version="1.0" encoding="UTF-8"?> |
| 733 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 734 |
-<pkgmetadata> |
| 735 |
- <herd>sci-chemistry</herd> |
| 736 |
- <maintainer> |
| 737 |
- <email>jlec@g.o</email> |
| 738 |
- <name>Justin Lecher</name> |
| 739 |
- </maintainer> |
| 740 |
-</pkgmetadata> |
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