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commit: 7b331f81eaab5fcd252a31f65cedf3af2a62e1c3 |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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AuthorDate: Fri Mar 17 13:33:26 2023 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
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CommitDate: Fri Mar 17 13:35:17 2023 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b331f81 |
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|
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dev-python/snakemake: add 7.24.2, drop 5.32.2 |
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|
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
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|
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...emake-5.32.2.ebuild => snakemake-7.24.2.ebuild} | 47 +++++++++++++--------- |
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1 file changed, 28 insertions(+), 19 deletions(-) |
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|
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diff --git a/dev-python/snakemake/snakemake-5.32.2.ebuild b/dev-python/snakemake/snakemake-7.24.2.ebuild |
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similarity index 54% |
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rename from dev-python/snakemake/snakemake-5.32.2.ebuild |
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rename to dev-python/snakemake/snakemake-7.24.2.ebuild |
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index 59d2f061a..fb9895514 100644 |
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--- a/dev-python/snakemake/snakemake-5.32.2.ebuild |
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+++ b/dev-python/snakemake/snakemake-7.24.2.ebuild |
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@@ -1,47 +1,55 @@ |
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# Copyright 1999-2022 Gentoo Authors |
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# Distributed under the terms of the GNU General Public License v2 |
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|
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-EAPI=7 |
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+EAPI=8 |
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|
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-PYTHON_COMPAT=( python3_{8..9} ) |
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-DISTUTILS_USE_SETUPTOOLS=rdepend |
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+PYTHON_COMPAT=( python3_{10..11} ) |
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+DISTUTILS_USE_PEP517=setuptools |
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|
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inherit distutils-r1 |
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|
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DESCRIPTION="Make-like task language" |
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HOMEPAGE="https://snakemake.readthedocs.io" |
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-SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
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+SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz" |
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|
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LICENSE="MIT" |
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SLOT="0" |
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-KEYWORDS="~amd64 ~x86" |
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+KEYWORDS="~amd64" |
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|
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-# missing test dep google.cloud |
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+# cannot import name '_helpers' from 'google.cloud' |
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RESTRICT="test" |
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|
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-BDEPEND="test? ( |
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- dev-python/requests-mock[${PYTHON_USEDEP}] |
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- dev-python/google-api-python-client[${PYTHON_USEDEP}] |
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- dev-python/jinja[${PYTHON_USEDEP}] |
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- dev-python/networkx[${PYTHON_USEDEP}] |
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- dev-python/pygments[${PYTHON_USEDEP}] |
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- dev-python/pygraphviz[${PYTHON_USEDEP}] |
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- dev-python/oauth2client[${PYTHON_USEDEP}] |
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- net-libs/google-cloud-cpp |
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-)" |
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+BDEPEND=" |
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+ dev-python/tomli[${PYTHON_USEDEP}] |
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+ test? ( |
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+ dev-python/requests-mock[${PYTHON_USEDEP}] |
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+ dev-python/google-api-python-client[${PYTHON_USEDEP}] |
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+ dev-python/networkx[${PYTHON_USEDEP}] |
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+ dev-python/pygments[${PYTHON_USEDEP}] |
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+ dev-python/pygraphviz[${PYTHON_USEDEP}] |
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+ net-libs/google-cloud-cpp |
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+ ) |
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+" |
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|
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RDEPEND=" |
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dev-python/appdirs[${PYTHON_USEDEP}] |
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dev-python/ConfigArgParse[${PYTHON_USEDEP}] |
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+ dev-python/connection_pool[${PYTHON_USEDEP}] |
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dev-python/datrie[${PYTHON_USEDEP}] |
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dev-python/docutils[${PYTHON_USEDEP}] |
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dev-python/GitPython[${PYTHON_USEDEP}] |
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+ dev-python/humanfriendly[${PYTHON_USEDEP}] |
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+ dev-python/jinja[${PYTHON_USEDEP}] |
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dev-python/jsonschema[${PYTHON_USEDEP}] |
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dev-python/nbformat[${PYTHON_USEDEP}] |
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dev-python/psutil[${PYTHON_USEDEP}] |
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dev-python/pyyaml[${PYTHON_USEDEP}] |
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- dev-python/ratelimit[${PYTHON_USEDEP}] |
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dev-python/requests[${PYTHON_USEDEP}] |
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+ dev-python/reretry[${PYTHON_USEDEP}] |
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+ dev-python/smart-open[${PYTHON_USEDEP}] |
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+ dev-python/stopit[${PYTHON_USEDEP}] |
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+ dev-python/tabulate[${PYTHON_USEDEP}] |
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+ dev-python/throttler[${PYTHON_USEDEP}] |
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dev-python/toposort[${PYTHON_USEDEP}] |
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dev-python/wrapt[${PYTHON_USEDEP}] |
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sci-mathematics/pulp[${PYTHON_USEDEP}] |
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@@ -50,7 +58,8 @@ RDEPEND=" |
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distutils_enable_sphinx docs \ |
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dev-python/sphinxcontrib-napoleon \ |
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dev-python/sphinx-argparse \ |
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- dev-python/sphinx_rtd_theme \ |
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+ dev-python/sphinx-rtd-theme \ |
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dev-python/docutils \ |
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- dev-python/recommonmark |
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+ dev-python/recommonmark \ |
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+ dev-python/myst-parser |
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distutils_enable_tests pytest |
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