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From: "Markus Dittrich (markusle)" <markusle@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-chemistry/pdb2pqr: ChangeLog pdb2pqr-1.1.2.ebuild pdb2pqr-1.2.1.ebuild pdb2pqr-1.3.0.ebuild
Date: Wed, 06 Feb 2008 15:14:14
Message-Id: E1JMlyU-0006uc-Qf@stork.gentoo.org
1 markusle 08/02/06 15:14:10
2
3 Modified: ChangeLog pdb2pqr-1.1.2.ebuild pdb2pqr-1.2.1.ebuild
4 Added: pdb2pqr-1.3.0.ebuild
5 Log:
6 Version bump (see bug #209007).
7 (Portage version: 2.1.4.1)
8
9 Revision Changes Path
10 1.11 sci-chemistry/pdb2pqr/ChangeLog
11
12 file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog?rev=1.11&view=markup
13 plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog?rev=1.11&content-type=text/plain
14 diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog?r1=1.10&r2=1.11
15
16 Index: ChangeLog
17 ===================================================================
18 RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v
19 retrieving revision 1.10
20 retrieving revision 1.11
21 diff -u -r1.10 -r1.11
22 --- ChangeLog 3 Apr 2007 15:54:17 -0000 1.10
23 +++ ChangeLog 6 Feb 2008 15:14:10 -0000 1.11
24 @@ -1,6 +1,11 @@
25 # ChangeLog for sci-chemistry/pdb2pqr
26 -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
27 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.10 2007/04/03 15:54:17 je_fro Exp $
28 +# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
29 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/ChangeLog,v 1.11 2008/02/06 15:14:10 markusle Exp $
30 +
31 +*pdb2pqr-1.3.0 (06 Feb 2008)
32 +
33 + 06 Feb 2008; Markus Dittrich <markusle@g.o> +pdb2pqr-1.3.0.ebuild:
34 + Version bump (see bug #209007).
35
36 *pdb2pqr-1.2.1 (03 Apr 2007)
37
38
39
40
41 1.8 sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild
42
43 file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild?rev=1.8&view=markup
44 plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild?rev=1.8&content-type=text/plain
45 diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild?r1=1.7&r2=1.8
46
47 Index: pdb2pqr-1.1.2.ebuild
48 ===================================================================
49 RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v
50 retrieving revision 1.7
51 retrieving revision 1.8
52 diff -u -r1.7 -r1.8
53 --- pdb2pqr-1.1.2.ebuild 13 Jul 2007 05:48:10 -0000 1.7
54 +++ pdb2pqr-1.1.2.ebuild 6 Feb 2008 15:14:10 -0000 1.8
55 @@ -1,10 +1,10 @@
56 -# Copyright 1999-2007 Gentoo Foundation
57 +# Copyright 1999-2008 Gentoo Foundation
58 # Distributed under the terms of the GNU General Public License v2
59 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v 1.7 2007/07/13 05:48:10 mr_bones_ Exp $
60 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.1.2.ebuild,v 1.8 2008/02/06 15:14:10 markusle Exp $
61
62 inherit eutils fortran multilib flag-o-matic distutils
63
64 -DESCRIPTION="pdb2pqr is an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations"
65 +DESCRIPTION="pdb2pqr is an automated pipeline for performing Poisson-Boltzmann electrostatics calculations"
66 LICENSE="GPL-2"
67 HOMEPAGE="http://pdb2pqr.sourceforge.net/"
68 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
69 @@ -18,7 +18,7 @@
70 FORTRAN="g77 gfortran"
71
72 src_unpack() {
73 - unpack "${A}"
74 + unpack ${A}
75 cd "${S}"
76
77 epatch "${FILESDIR}"/${P}-gcc4-gentoo.patch
78 @@ -66,7 +66,7 @@
79 EOF
80
81 exeinto /usr/bin
82 - doexe ${T}/${PN} || die "Failed to install pdb2pqr wrapper."
83 + doexe "${T}"/${PN} || die "Failed to install pdb2pqr wrapper."
84
85 dodoc ChangeLog NEWS README AUTHORS || \
86 die "Failed to install docs"
87
88
89
90 1.4 sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild
91
92 file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild?rev=1.4&view=markup
93 plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild?rev=1.4&content-type=text/plain
94 diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild?r1=1.3&r2=1.4
95
96 Index: pdb2pqr-1.2.1.ebuild
97 ===================================================================
98 RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v
99 retrieving revision 1.3
100 retrieving revision 1.4
101 diff -u -r1.3 -r1.4
102 --- pdb2pqr-1.2.1.ebuild 13 Jul 2007 05:48:10 -0000 1.3
103 +++ pdb2pqr-1.2.1.ebuild 6 Feb 2008 15:14:10 -0000 1.4
104 @@ -1,10 +1,10 @@
105 -# Copyright 1999-2007 Gentoo Foundation
106 +# Copyright 1999-2008 Gentoo Foundation
107 # Distributed under the terms of the GNU General Public License v2
108 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v 1.3 2007/07/13 05:48:10 mr_bones_ Exp $
109 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.2.1.ebuild,v 1.4 2008/02/06 15:14:10 markusle Exp $
110
111 inherit eutils fortran multilib flag-o-matic distutils
112
113 -DESCRIPTION="pdb2pqr is an automated pipeline for the setup, execution, and analysis of Poisson-Boltzmann electrostatics calculations"
114 +DESCRIPTION="pdb2pqr is an automated pipeline for performing Poisson-Boltzmann electrostatics calculations"
115 LICENSE="GPL-2"
116 HOMEPAGE="http://pdb2pqr.sourceforge.net/"
117 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
118 @@ -58,7 +58,7 @@
119 EOF
120
121 exeinto /usr/bin
122 - doexe ${T}/${PN} || die "Failed to install pdb2pqr wrapper."
123 + doexe "${T}"/${PN} || die "Failed to install pdb2pqr wrapper."
124
125 dodoc ChangeLog NEWS README AUTHORS || \
126 die "Failed to install docs"
127
128
129
130 1.1 sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild
131
132 file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild?rev=1.1&view=markup
133 plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild?rev=1.1&content-type=text/plain
134
135 Index: pdb2pqr-1.3.0.ebuild
136 ===================================================================
137 # Copyright 1999-2008 Gentoo Foundation
138 # Distributed under the terms of the GNU General Public License v2
139 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb2pqr/pdb2pqr-1.3.0.ebuild,v 1.1 2008/02/06 15:14:10 markusle Exp $
140
141 inherit eutils fortran multilib flag-o-matic distutils
142
143 DESCRIPTION="pdb2pqr is an automated pipeline for performing Poisson-Boltzmann electrostatics calculations"
144 LICENSE="BSD"
145 HOMEPAGE="http://pdb2pqr.sourceforge.net/"
146 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
147
148 SLOT="0"
149 IUSE=""
150 KEYWORDS="~amd64 ~x86"
151
152 DEPEND="dev-lang/python"
153
154 FORTRAN="g77 gfortran"
155
156 src_compile() {
157 # we need to compile the *.so as pic
158 append-flags -fPIC
159 FFLAGS="${FFLAGS} -fPIC"
160 F77="${FORTRANC}" econf || die "econf failed"
161 emake || die "emake failed"
162 }
163
164 src_install() {
165 python_version
166 INPATH="/usr/$(get_libdir)/python${PYVER}/site-packages/${PN}"
167
168 insinto "${INPATH}"
169 doins __init__.py || \
170 die "Setting up the pdb2pqr site-package failed."
171
172 exeinto "${INPATH}"
173 doexe ${PN}.py || die "Installing pdb2pqr failed."
174
175 exeinto "${INPATH}"/propka
176 doexe propka/_propkalib.so || \
177 die "Failed to install propka."
178
179 exeinto "${INPATH}"/extensions
180 doexe extensions/* || \
181 die "Failed to install extensions."
182
183 insinto "${INPATH}"/propka
184 doins propka/propkalib.py propka/__init__.py || \
185 die "Failed to install propka."
186
187 insinto "${INPATH}"/src
188 doins src/* || die "Installing of python scripts failed."
189
190 insinto "${INPATH}"/dat
191 doins dat/* || die "Installing data failed."
192
193 # generate pdb2pqr wrapper
194 cat >> "${T}"/${PN} <<-EOF
195 #!/bin/sh
196 ${python} ${INPATH}/${PN}.py \$*
197 EOF
198
199 exeinto /usr/bin
200 doexe "${T}"/${PN} || die "Failed to install pdb2pqr wrapper."
201
202 dodoc ChangeLog NEWS README AUTHORS || \
203 die "Failed to install docs"
204 dohtml -r doc/* || die "Failed to install html docs."
205 }
206
207
208
209 --
210 gentoo-commits@l.g.o mailing list
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