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jlec 12/11/02 19:00:59 |
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|
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Modified: ChangeLog |
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Added: ncbi-tools++-0.2010.06.15-r1.ebuild |
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Removed: ncbi-tools++-2010.06.15.ebuild |
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Log: |
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sci-biology/ncbi-tools++: Drop old, duplicate with lower version number for new versioning schema |
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|
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(Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916) |
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|
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Revision Changes Path |
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1.24 sci-biology/ncbi-tools++/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.24&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.24&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?r1=1.23&r2=1.24 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v |
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retrieving revision 1.23 |
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retrieving revision 1.24 |
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diff -u -r1.23 -r1.24 |
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--- ChangeLog 3 Jun 2012 12:53:18 -0000 1.23 |
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+++ ChangeLog 2 Nov 2012 19:00:59 -0000 1.24 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/ncbi-tools++ |
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# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.23 2012/06/03 12:53:18 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.24 2012/11/02 19:00:59 jlec Exp $ |
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+ |
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+*ncbi-tools++-0.2010.06.15-r1 (02 Nov 2012) |
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+ |
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+ 02 Nov 2012; Justin Lecher <jlec@g.o> |
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+ +ncbi-tools++-0.2010.06.15-r1.ebuild, -ncbi-tools++-2010.06.15.ebuild: |
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+ Drop old, duplicate with lower version number for new versioning schema |
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|
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03 Jun 2012; Justin Lecher <jlec@g.o> |
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ncbi-tools++-2010.06.15-r1.ebuild, |
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|
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|
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1.1 sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: ncbi-tools++-0.2010.06.15-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-0.2010.06.15-r1.ebuild,v 1.1 2012/11/02 19:00:59 jlec Exp $ |
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EAPI="3" |
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|
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inherit eutils flag-o-matic multilib toolchain-funcs |
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|
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MY_TAG="Jun_15_2010" |
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MY_Y="${MY_TAG/*_/}" |
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MY_P="ncbi_cxx--${MY_TAG}" |
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|
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DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+" |
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HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit" |
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SRC_URI=" |
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ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz |
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http://dev.gentoo.org/~jlec/distfiles/${P}-asneeded.patch.xz" |
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|
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LICENSE="public-domain" |
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SLOT="0" |
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IUSE="sqlite mysql" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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|
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DEPEND=" |
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sqlite? ( dev-db/sqlite:3 ) |
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mysql? ( virtual/mysql )" |
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RDEPEND="${DEPEND}" |
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|
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S="${WORKDIR}/${MY_P}" |
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|
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src_prepare() { |
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# filter-ldflags -Wl,--as-needed |
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# append-ldflags -Wl,--no-undefined |
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sed -i -e 's/-print-file-name=libstdc++.a//' \ |
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-e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \ |
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src/build-system/configure || die |
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epatch \ |
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"${FILESDIR}"/${P}-gcc46.patch \ |
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"${FILESDIR}"/${P}-gcc47.patch \ |
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"${WORKDIR}"/${P}-asneeded.patch \ |
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"${FILESDIR}"/${P}-libpng15.patch \ |
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"${FILESDIR}"/${P}-glibc-214.patch |
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|
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use prefix && append-ldflags -Wl,-rpath,"${EPREFIX}/usr/$(get_libdir)/${PN}" |
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} |
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|
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src_configure() { |
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tc-export CXX CC |
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# conf check for sqlite and mysql |
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"${S}"/configure --without-debug \ |
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--with-bin-release \ |
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--with-bincopy \ |
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--without-static \ |
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--with-dll \ |
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--with-mt \ |
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--prefix="${ED}"/usr \ |
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--libdir="${ED}"/usr/$(get_libdir)/${PN} \ |
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|| die |
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} |
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|
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src_compile() { |
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emake all_r -C GCC*-Release*/build || die |
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} |
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|
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src_install() { |
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emake install || die |
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# File collisions with sci-biology/ncbi-tools |
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rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp} |
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|
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echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN} |
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doenvd "${S}/99${PN}" |
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} |
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|
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pkg_postinst() { |
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einfo 'Please run "source /etc/profile" before using this package in the current shell.' |
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} |
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