[gentoo-commits] gentoo-x86 commit in sci-biology/arb: metadata.xml ChangeLog arb-5.1.ebuild

[Andrey Kislyuk (weaver)]

weaver      09/10/04 00:25:30

  Added:                metadata.xml ChangeLog arb-5.1.ebuild
  Log:
  Import from Science overlay and version bump
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-biology/arb/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/arb/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/arb/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<maintainer>
		<email>weaver@g.o</email>
		<name>Andrey Kislyuk</name>
	</maintainer>
	<herd>sci-biology</herd>
</pkgmetadata>



1.1                  sci-biology/arb/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/arb/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/arb/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/arb
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/ChangeLog,v 1.1 2009/10/04 00:25:29 weaver Exp $

*arb-5.1 (03 Oct 2009)

  03 Oct 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml,
  +arb-5.1.ebuild:
  Import from Science overlay and version bump




1.1                  sci-biology/arb/arb-5.1.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/arb/arb-5.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/arb/arb-5.1.ebuild?rev=1.1&content-type=text/plain

Index: arb-5.1.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/arb-5.1.ebuild,v 1.1 2009/10/04 00:25:29 weaver Exp $

EAPI=2

inherit eutils toolchain-funcs

DESCRIPTION="Tools for DNA/RNA sequence database handling and data analysis, phylogenetic analysis"
HOMEPAGE="http://www.arb-home.de/"
SRC_URI="http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz"
MY_TAG=6213

LICENSE="arb"
SLOT="0"
IUSE="+opengl"
KEYWORDS="~amd64 ~x86"

DEPEND="app-text/sablotron
	www-client/lynx
	x11-libs/openmotif
	x11-libs/libXpm
	x11-libs/libXaw
	media-libs/tiff
	media-libs/libpng
	opengl? ( media-libs/glew
		virtual/glut
		media-libs/mesa[motif] )"
RDEPEND="${DEPEND}
	sci-visualization/gnuplot"
# Recommended: libmotif3 gv xfig xterm treetool java

S="${WORKDIR}/arbsrc_${MY_TAG}"

src_prepare() {
	sed -i -e 's/getline/arb_getline/' READSEQ/ureadseq.c || die
	sed -i \
		-e 's/all: checks/all:/' \
		-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
		-e "s/GPP:=.*/GPP=$(tc-getCXX) ${CFLAGS}/" \
		"${S}/Makefile" || die
	cp config.makefile.template config.makefile
	sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die
	use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile
	use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile
	emake ARBHOME="${S}" links || die
	# In 5.0; fixed in 5.1
	# (cd INCLUDE/GL; for i in ../../GL/glAW/*.h; do ln -s $i; done) || die
}

src_compile() {
	emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile || die
	use amd64 && mv arb.tgz arb.64.gentoo.tgz
	use x86 && mv arb.tgz arb.32.gentoo.tgz
	ln -s arb.*.tgz arb.tgz || die
}

src_install() {
	ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
	cat <<EOF > "${S}/99${PN}"
ARBHOME=/opt/arb
PATH=/opt/arb/bin
LD_LIBRARY_PATH=/opt/arb/lib
EOF
	doenvd "${S}/99${PN}" || die
}