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commit: c38274779a20385ad70d5c2aa2dac34d8525868d |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Sun Jan 29 13:44:25 2017 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Sun Jan 29 13:44:25 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3827477 |
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|
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sci-biology/SEECER: QA fixes |
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|
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Bump to6 EAPI |
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drop non active code |
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add missing slot operator |
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|
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Package-Manager: Portage-2.3.3, Repoman-2.3.1 |
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/SEECER/SEECER-0.1.3-r2.ebuild | 23 +++++++++++------------ |
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sci-biology/SEECER/metadata.xml | 2 +- |
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2 files changed, 12 insertions(+), 13 deletions(-) |
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|
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diff --git a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild |
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index 8d8e919..f2b5a67 100644 |
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--- a/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild |
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+++ b/sci-biology/SEECER/SEECER-0.1.3-r2.ebuild |
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@@ -1,41 +1,40 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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+# Copyright 1999-2017 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Id$ |
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|
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-EAPI=5 |
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+EAPI=6 |
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|
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inherit eutils |
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|
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DESCRIPTION="SEquencing Error Corrector for RNA-Seq reads" |
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HOMEPAGE="http://sb.cs.cmu.edu/seecer/" |
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-if [ "$PV" == "9999" ]; then |
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- EGIT_REPO_URI="https://github.com/haisonle/SEECER.git" |
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- KEYWORDS="" |
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-else |
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- SRC_URI=" |
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+SRC_URI=" |
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http://sb.cs.cmu.edu/seecer/downloads/"${P}".tar.gz |
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http://sb.cs.cmu.edu/seecer/downloads/manual.pdf -> "${PN}"-manual.pdf" |
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- KEYWORDS="~amd64" |
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-fi |
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|
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LICENSE="GPL-3" |
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SLOT="0" |
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IUSE="" |
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+KEYWORDS="~amd64" |
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|
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# although has bundled jellyfish-1.1.11 copy it just calls the executable during runtime |
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# seems jellyfish-2 does not accept same commandline arguments |
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DEPEND=" |
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- sci-libs/gsl |
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- sci-biology/seqan" |
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+ sci-libs/gsl:0= |
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+ sci-biology/seqan:0=" |
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RDEPEND="${DEPEND} |
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=sci-biology/jellyfish-1.1.11" |
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|
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S="${S}"/SEECER |
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|
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+PATCHES=( |
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+ "${FILESDIR}"/remove-hardcoded-paths.patch |
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+) |
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+ |
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src_prepare(){ |
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# http://seecer-rna-read-error-correction-mailing-list.21961.x6.nabble.com/Segmentation-fault-in-step-4-td41.html |
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cp -p "${FILESDIR}"/replace_ids.cc "${S}"/src/ || die |
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- epatch "${FILESDIR}"/remove-hardcoded-paths.patch |
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+ default |
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} |
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|
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src_install(){ |
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|
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diff --git a/sci-biology/SEECER/metadata.xml b/sci-biology/SEECER/metadata.xml |
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index 1699e58..f68a1b6 100644 |
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--- a/sci-biology/SEECER/metadata.xml |
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+++ b/sci-biology/SEECER/metadata.xml |
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@@ -5,7 +5,7 @@ |
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<email>mmokrejs@×××××××××××××××.cz</email> |
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<name>Martin Mokrejs</name> |
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</maintainer> |
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-<maintainer type="project"> |
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+ <maintainer type="project"> |
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<email>sci-biology@g.o</email> |
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<name>Gentoo Biology Project</name> |
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</maintainer> |
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