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commit: 51fe11a3b2a3519a325f9cb86f1b27ea0cf9ec62 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Tue Apr 18 12:09:06 2017 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Tue Apr 18 12:09:06 2017 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=51fe11a3 |
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|
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sci-libs/libmaus2: make configure to enable optional but highly wanted features |
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|
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The configure by default has a number of features disables, and does not enable |
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the option. It somehow does not even try to look for headers and libs from say |
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snappy unless --enable-snappy was passed. |
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|
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Try to blindly enable most of the features although it is not clear whether say |
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gnutls should be preferred over nettle, likewise when --enable-sse4 is any better |
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--enable-sse3 (and should not be enabled concurrently with it). |
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|
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Package-Manager: Portage-2.3.5, Repoman-2.3.2 |
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|
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sci-libs/libmaus2/libmaus2-9999.ebuild | 20 +++++++++++++++++--- |
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1 file changed, 17 insertions(+), 3 deletions(-) |
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|
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diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild |
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index ab60eeb60..fcf29886d 100644 |
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--- a/sci-libs/libmaus2/libmaus2-9999.ebuild |
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+++ b/sci-libs/libmaus2/libmaus2-9999.ebuild |
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@@ -1,4 +1,4 @@ |
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-# Copyright 1999-2014 Gentoo Foundation |
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+# Copyright 1999-2017 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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|
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EAPI=6 |
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@@ -12,19 +12,33 @@ EGIT_REPO_URI="https://github.com/gt1/libmaus2.git" |
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LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS |
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SLOT="0" |
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KEYWORDS="" |
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-IUSE="" |
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+IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" |
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|
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DEPEND=" |
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!sci-libs/libmaus |
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sci-libs/io_lib |
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app-arch/snappy |
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- sci-biology/seqan" |
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+ sci-biology/seqan |
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+ sci-libs/fftw |
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+ sci-libs/hdf5 |
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+ net-libs/gnutls |
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+ dev-libs/nettle" |
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+# --with-daligner |
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+# --with-irods |
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|
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src_prepare() { |
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eautoreconf |
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eapply_user |
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} |
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|
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+src_configure(){ |
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+ local CONFIG_OPTS |
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+ use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) |
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+ ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) |
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+ econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ |
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+ --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw |
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+} |
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+ |
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pkg_postinst(){ |
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einfo "The io_lib, snappy and seqan dependencies are not strictly needed" |
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einfo "but were forced for optimal libmaus2 performance." |
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