[gentoo-commits] proj/sci:master commit in: sci-biology/germline/

[Martin Mokrejs]

commit:     ff1f85519180af8eef93cd641ff1fd06fbf7909a
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Sep 23 17:35:42 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Sep 23 17:35:42 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ff1f8551

sci-biology/germline: version bump

Package-Manager: portage-2.3.0

 sci-biology/germline/germline-1.5.2.ebuild | 36 ++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/sci-biology/germline/germline-1.5.2.ebuild b/sci-biology/germline/germline-1.5.2.ebuild
new file mode 100644
index 0000000..b3b681b
--- /dev/null
+++ b/sci-biology/germline/germline-1.5.2.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit versionator toolchain-funcs
+
+MY_PV=$(replace_all_version_separators '-')
+
+DESCRIPTION="Find shared segments of Identity by Descent (IBD) between pairs of individuals"
+HOMEPAGE="http://www.cs.columbia.edu/~gusev/germline
+	http://genome.cshlp.org/content/19/2/318.full"
+SRC_URI="http://www.cs.columbia.edu/~gusev/${PN}/${PN}-${MY_PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="dev-libs/boost"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/${PN}-${MY_PV}
+
+src_prepare(){
+	sed -e "s/-O3 /${CXXFLAGS} /;s/g++/$(tc-getCXX)/" -i Makefile || die
+	sed -e "s#diff -q -s test/expected.match test/generated.match#diff -q -s test/expected.match test/generated.match || cat test/generated.err#" -i Makefile || die
+	sed -e "s/^all: clean germline bmatch test/all: clean germline bmatch/" -i Makefile || die
+	default
+}
+
+src_install(){
+	dobin germline parse_bmatch
+	dodoc README
+}