[gentoo-commits] proj/sci:master commit in: sci-biology/wgs_tools/

[Martin Mokrejs]

commit:     6b020466331bf69a623d04b7f30b7a6b3f78fd50
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jul 12 14:51:39 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jul 12 14:51:39 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6b020466

sci-biology/wgs_tools: add taxonomy-related info to NCBI SRA and BLAST+

Package-Manager: portage-2.2.28

 sci-biology/wgs_tools/metadata.xml          | 12 ++++++++++
 sci-biology/wgs_tools/wgs_tools-9999.ebuild | 36 +++++++++++++++++++++++++++++
 2 files changed, 48 insertions(+)

diff --git a/sci-biology/wgs_tools/metadata.xml b/sci-biology/wgs_tools/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/wgs_tools/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@g.o</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/wgs_tools/wgs_tools-9999.ebuild b/sci-biology/wgs_tools/wgs_tools-9999.ebuild
new file mode 100644
index 0000000..d3c7656
--- /dev/null
+++ b/sci-biology/wgs_tools/wgs_tools-9999.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+DESCRIPTION="Scripts for ncbi-tools++ and SRA postprocessing using taxonomy"
+HOMEPAGE="ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS
+	http://www.ncbi.nlm.nih.gov/books/NBK279690/
+	http://www.ncbi.nlm.nih.gov/genbank/wgs"
+SRC_URI="ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS/taxid2tsa.pl
+	ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS/taxid2wgs.pl"
+
+LICENSE="all-rights-reserved"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	dev-lang/perl"
+
+src_install(){
+	dobin *.pl
+	dodoc README*
+}
+
+pkg_postinst(){
+	einfo "These scripts are helpful for VDB-enabled blast+ applications"
+	einfo "and for tools from SRA toolkit sci-biology/sra_sdk or"
+	einfo "sci-biology/sra_toolkit-bin. They are not added to DEPENDENCIES"
+	einfo "yet until the packages are stable. Probably you want to download"
+	einfo "Please read http://www.ncbi.nlm.nih.gov/books/NBK158899/"
+	einfo "and unpack one of the prebuilt binaries from:"
+	einfo "https://github.com/ncbi/sra-tools/wiki/Downloads"
+}