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commit: 946948c8d23cfdc67d6f877730a5a6986fdf94c7 |
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Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr> |
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AuthorDate: Sun Aug 22 19:37:17 2021 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sun Aug 22 19:37:17 2021 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=946948c8 |
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|
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sci-biology/plink: Port to EAPI 8 |
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|
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Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr> |
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Signed-off-by: David Seifert <soap <AT> gentoo.org> |
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|
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sci-biology/plink/plink-1.90_pre140514.ebuild | 13 +++++++------ |
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1 file changed, 7 insertions(+), 6 deletions(-) |
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|
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diff --git a/sci-biology/plink/plink-1.90_pre140514.ebuild b/sci-biology/plink/plink-1.90_pre140514.ebuild |
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index 578881ac0f5..2595c3ab798 100644 |
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--- a/sci-biology/plink/plink-1.90_pre140514.ebuild |
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+++ b/sci-biology/plink/plink-1.90_pre140514.ebuild |
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@@ -1,36 +1,36 @@ |
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# Copyright 1999-2021 Gentoo Authors |
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# Distributed under the terms of the GNU General Public License v2 |
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|
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-EAPI=5 |
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+EAPI=8 |
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|
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inherit toolchain-funcs |
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|
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DESCRIPTION="Whole genome association analysis toolset" |
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HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/" |
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SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> ${P}.zip" |
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+S="${WORKDIR}" |
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|
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LICENSE="GPL-2" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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-IUSE="" |
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|
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RDEPEND=" |
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sys-libs/zlib |
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virtual/cblas |
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virtual/lapack |
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" |
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-DEPEND=" |
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- ${RDEPEND} |
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+DEPEND="${RDEPEND}" |
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+BDEPEND=" |
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app-arch/unzip |
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virtual/pkgconfig |
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" |
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|
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-S="${WORKDIR}/" |
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- |
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# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. |
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# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. |
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|
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src_prepare() { |
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+ default |
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+ |
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sed \ |
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-e 's:zlib-1.2.8/zlib.h:zlib.h:g' \ |
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-i *.{c,h} || die |
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@@ -47,6 +47,7 @@ src_compile() { |
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emake \ |
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CXX=$(tc-getCXX) \ |
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CFLAGS="${CFLAGS}" \ |
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+ LDFLAGS="${LDFLAGS}" \ |
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ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \ |
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BLASFLAGS="$($(tc-getPKG_CONFIG) --libs lapack cblas)" |
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} |
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