[gentoo-commits] proj/sci:master commit in: sci-biology/tgicl/

[Martin Mokrejs]

commit:     7227ff362b255f8a88cadc725ad2b768aeb5e54b
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Feb 21 11:21:31 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Feb 21 11:21:31 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7227ff36

sci-biology/tgicl: make sure we call perl and not perl-5.15.2 directly

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/tgicl/tgicl-2.1.ebuild |    5 +++++
 1 files changed, 5 insertions(+), 0 deletions(-)

diff --git a/sci-biology/tgicl/tgicl-2.1.ebuild b/sci-biology/tgicl/tgicl-2.1.ebuild
index 087a38c..5871289 100644
--- a/sci-biology/tgicl/tgicl-2.1.ebuild
+++ b/sci-biology/tgicl/tgicl-2.1.ebuild
@@ -41,4 +41,9 @@ src_install(){
 	einfo "We have to use the mgblast binary provided by upstream because it cannot be compiled against newer ncbi-tools anymore"
 	einfo "We also keep pvmsx binary because the pvmsx package needs pvm3.h header which is probably the one from pvm bundle which is not in portage at all, contact sys-cluster herd"
 	for f in mdust psx sclust tclust nrcl zmsort cap3 formatdb cdbfasta cdbyank; do rm -f "${D}"/usr/bin/$f || die "Cannot delete ${D}"/usr/bin/"$f"; done
+
+	# fix first lines of teh script to use /usr/bin/perl instead of /usr/bin/perl-$version
+	for f in tgicl tgicl_asm.psx tgicl_asmpta.psx tgicl_cluster.psx; do
+		sed -i 's@^#!/usr/bin/perl-*@#! /usr/bin/perl@' "${D}"/usr/bin/$f || die "Failed to fix ${D}"/usr/bin/"$f";
+	done
 }