Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/quorum/
Date: Tue, 01 May 2018 22:38:09
Message-Id: 1525214277.8ca2d5383f188ff26ee9714b431dfed95c8b9b7a.mmokrejs@gentoo
1 commit: 8ca2d5383f188ff26ee9714b431dfed95c8b9b7a
2 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
3 AuthorDate: Tue May 1 22:37:57 2018 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Tue May 1 22:37:57 2018 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=8ca2d538
7
8 sci-biology/quorum: drop old
9
10 Anyway it doe snot compile with gcc-7.3.0, see
11 https://github.com/gmarcais/Jellyfish/issues/122
12
13 Package-Manager: Portage-2.3.31, Repoman-2.3.9
14
15 sci-biology/quorum/quorum-0.2.1-r1.ebuild | 28 ----------------------------
16 1 file changed, 28 deletions(-)
17
18 diff --git a/sci-biology/quorum/quorum-0.2.1-r1.ebuild b/sci-biology/quorum/quorum-0.2.1-r1.ebuild
19 deleted file mode 100644
20 index d7bb7675a..000000000
21 --- a/sci-biology/quorum/quorum-0.2.1-r1.ebuild
22 +++ /dev/null
23 @@ -1,28 +0,0 @@
24 -# Copyright 1999-2018 Gentoo Foundation
25 -# Distributed under the terms of the GNU General Public License v2
26 -
27 -EAPI=6
28 -
29 -inherit eutils autotools
30 -
31 -DESCRIPTION="Correct substitution errors in Illumina reads"
32 -HOMEPAGE="http://www.genome.umd.edu/quorum.html"
33 -SRC_URI="ftp://ftp.genome.umd.edu/pub/QuorUM/${P}.tar.gz"
34 -
35 -LICENSE="GPL-3"
36 -SLOT="0"
37 -KEYWORDS="~amd64"
38 -IUSE=""
39 -
40 -DEPEND="sci-biology/jellyfish:1"
41 -RDEPEND="${DEPEND}"
42 -
43 -src_prepare(){
44 - default
45 - epatch "${FILESDIR}"/"${P}"-use-jellyfish1.patch
46 - eautoreconf
47 -}
48 -
49 -src_configure(){
50 - econf --enable-relative-paths --with-relative-jf-path
51 -}