Archives
Archives
| From: | "Justin Lecher (jlec)" <jlec@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/vaal: ChangeLog vaal-46233.ebuild |
| Date: | Sun, 02 Jun 2013 11:57:47 |
| Message-Id: | 20130602115740.B311C2171D@flycatcher.gentoo.org |
| 1 | jlec 13/06/02 11:57:40 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: vaal-46233.ebuild |
| 5 | Log: |
| 6 | sci-biology/vaal: Version BUmp |
| 7 | |
| 8 | (Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916) |
| 9 | |
| 10 | Revision Changes Path |
| 11 | 1.13 sci-biology/vaal/ChangeLog |
| 12 | |
| 13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.13&view=markup |
| 14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?rev=1.13&content-type=text/plain |
| 15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/ChangeLog?r1=1.12&r2=1.13 |
| 16 | |
| 17 | Index: ChangeLog |
| 18 | =================================================================== |
| 19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v |
| 20 | retrieving revision 1.12 |
| 21 | retrieving revision 1.13 |
| 22 | diff -u -r1.12 -r1.13 |
| 23 | --- ChangeLog 12 Mar 2013 12:12:45 -0000 1.12 |
| 24 | +++ ChangeLog 2 Jun 2013 11:57:40 -0000 1.13 |
| 25 | @@ -1,6 +1,11 @@ |
| 26 | # ChangeLog for sci-biology/vaal |
| 27 | # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
| 28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.12 2013/03/12 12:12:45 jlec Exp $ |
| 29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.13 2013/06/02 11:57:40 jlec Exp $ |
| 30 | + |
| 31 | +*vaal-46233 (02 Jun 2013) |
| 32 | + |
| 33 | + 02 Jun 2013; Justin Lecher <jlec@g.o> +vaal-46233.ebuild: |
| 34 | + Version BUmp |
| 35 | |
| 36 | 12 Mar 2013; Justin Lecher <jlec@g.o> metadata.xml: |
| 37 | Drop Andrey as maintainer so that bugs get assigned to sci-biology directly |
| 38 | |
| 39 | |
| 40 | |
| 41 | 1.1 sci-biology/vaal/vaal-46233.ebuild |
| 42 | |
| 43 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-46233.ebuild?rev=1.1&view=markup |
| 44 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vaal/vaal-46233.ebuild?rev=1.1&content-type=text/plain |
| 45 | |
| 46 | Index: vaal-46233.ebuild |
| 47 | =================================================================== |
| 48 | # Copyright 1999-2013 Gentoo Foundation |
| 49 | # Distributed under the terms of the GNU General Public License v2 |
| 50 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-46233.ebuild,v 1.1 2013/06/02 11:57:40 jlec Exp $ |
| 51 | |
| 52 | EAPI=5 |
| 53 | |
| 54 | AUTOTOOLS_AUTORECONF=yes |
| 55 | |
| 56 | inherit autotools-utils |
| 57 | |
| 58 | DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms" |
| 59 | HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/" |
| 60 | SRC_URI=" |
| 61 | ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz |
| 62 | ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc" |
| 63 | |
| 64 | LICENSE="Whitehead-MIT" |
| 65 | SLOT="0" |
| 66 | KEYWORDS="~amd64 ~x86" |
| 67 | IUSE="openmp" |
| 68 | |
| 69 | DEPEND=">=dev-libs/boost-1.41.0-r3" |
| 70 | RDEPEND="${DEPEND}" |
| 71 | |
| 72 | DOCS=( "${DISTDIR}/VAAL_manual.doc" ) |
| 73 | |
| 74 | src_prepare() { |
| 75 | sed \ |
| 76 | -e '/COPYING/d' \ |
| 77 | -i src/Makefile.am || die |
| 78 | |
| 79 | sed \ |
| 80 | -e 's:-ggdb::g' \ |
| 81 | -e '/AC_OPENMP_CEHCK/d' \ |
| 82 | -i configure.ac || die |
| 83 | autotools-utils_src_prepare |
| 84 | } |
| 85 | |
| 86 | src_configure(){ |
| 87 | local myeconfargs=( $(use_enable openmp) ) |
| 88 | autotools-utils_src_configure |
| 89 | } |