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commit: 465ad2177c6573574db5d9514684adb90208fd6e |
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Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr> |
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AuthorDate: Tue May 4 21:56:00 2021 +0000 |
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Commit: Sam James <sam <AT> gentoo <DOT> org> |
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CommitDate: Tue May 4 22:29:35 2021 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=465ad217 |
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|
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sci-biology/diya: Remove last-rited pkg |
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|
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Closes: https://bugs.gentoo.org/625492 |
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Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr> |
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Signed-off-by: Sam James <sam <AT> gentoo.org> |
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|
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profiles/package.mask | 5 ----- |
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sci-biology/diya/Manifest | 1 - |
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sci-biology/diya/diya-1.0_rc4.ebuild | 42 ------------------------------------ |
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sci-biology/diya/metadata.xml | 11 ---------- |
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4 files changed, 59 deletions(-) |
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|
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diff --git a/profiles/package.mask b/profiles/package.mask |
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index 7fe45dfde90..34796fa37a1 100644 |
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--- a/profiles/package.mask |
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+++ b/profiles/package.mask |
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@@ -637,11 +637,6 @@ dev-php/PEAR-Net_LDAP3 |
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# #542940, #574632, #780396, removal in 30 days. |
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sci-biology/gatk |
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|
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-# David Seifert <soap@g.o> (2021-04-05) |
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-# Tests broken since perl 5.22, last release in 2008, |
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-# Bug #625492, removal in 30 days. |
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-sci-biology/diya |
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- |
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# Michał Górny <mgorny@g.o> (2021-03-31) |
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# New versions remove PORTAGE_CONFIGROOT support, breaking a lot |
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# of scripts. |
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|
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diff --git a/sci-biology/diya/Manifest b/sci-biology/diya/Manifest |
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deleted file mode 100644 |
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index 7a98449a5c8..00000000000 |
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--- a/sci-biology/diya/Manifest |
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+++ /dev/null |
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@@ -1 +0,0 @@ |
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-DIST diya-1.0-rc4.tar.gz 386706 BLAKE2B 9d000892c3da9ec307a8e089056611bc9cd566ac2dea046601506215c1a5c5fb67621324d2d9e1de94ee4e00129325448e3a1a8aa417e5d8c07f564a77e287d6 SHA512 64a00cb7f07200882d0b97f58e6b7f26d08ab0eab43834c3d19ab08f61080f8edb4a63833095e876c72c087324d39b2c4334ed1d3aa0280b7efb6a7ab3e08007 |
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|
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diff --git a/sci-biology/diya/diya-1.0_rc4.ebuild b/sci-biology/diya/diya-1.0_rc4.ebuild |
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deleted file mode 100644 |
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index ae923b60da8..00000000000 |
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--- a/sci-biology/diya/diya-1.0_rc4.ebuild |
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+++ /dev/null |
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@@ -1,42 +0,0 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI="5" |
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- |
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-inherit perl-module |
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- |
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-DESCRIPTION="Do It Yourself Annotation, tools & libraries for sequence assembly & annotation" |
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-HOMEPAGE="http://gmod.org/wiki/Diya" |
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-SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz" |
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- |
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-LICENSE="GPL-3" |
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-SLOT="0" |
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-IUSE="-minimal" |
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-KEYWORDS="~amd64 ~x86" |
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- |
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-DEPEND="sci-biology/bioperl |
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- dev-perl/Data-Utilities |
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- dev-perl/XML-Simple" |
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-RDEPEND="${DEPEND} |
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- !minimal? ( |
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- sci-biology/mummer |
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- sci-biology/glimmer |
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- sci-biology/trnascan-se |
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- sci-biology/infernal )" |
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- |
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-# see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++ |
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-# * rfamscan.pl v0.1 (http://www.sanger.ac.uk/Users/sgj/code/) |
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-# * UniRef50 (http://www.ebi.ac.uk/uniref/) |
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-# * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/) |
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-# The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/. |
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- |
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-S="${WORKDIR}/diya-${PV/_/-}" |
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- |
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-SRC_TEST=do |
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- |
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-src_install() { |
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- mydoc="INSTALL README docs/diya.html" |
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- perl-module_src_install |
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- insinto /usr/share/${PN} |
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- doins -r diya.conf docs examples scripts |
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-} |
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|
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diff --git a/sci-biology/diya/metadata.xml b/sci-biology/diya/metadata.xml |
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deleted file mode 100644 |
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index 37bde911b94..00000000000 |
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--- a/sci-biology/diya/metadata.xml |
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+++ /dev/null |
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@@ -1,11 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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- <upstream> |
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- <remote-id type="sourceforge">diyg</remote-id> |
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- </upstream> |
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-</pkgmetadata> |
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