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jlec 15/03/29 14:48:58 |
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|
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Modified: ChangeLog |
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Added: mafft-7.215.ebuild |
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Log: |
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Version BUmp; drop obsolete patch |
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|
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(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) |
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|
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Revision Changes Path |
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1.21 sci-biology/mafft/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?rev=1.21&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?rev=1.21&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/ChangeLog?r1=1.20&r2=1.21 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v |
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retrieving revision 1.20 |
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retrieving revision 1.21 |
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diff -u -r1.20 -r1.21 |
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--- ChangeLog 19 Jul 2013 09:44:31 -0000 1.20 |
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+++ ChangeLog 29 Mar 2015 14:48:58 -0000 1.21 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/mafft |
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-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.20 2013/07/19 09:44:31 jlec Exp $ |
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+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.21 2015/03/29 14:48:58 jlec Exp $ |
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+ |
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+*mafft-7.215 (29 Mar 2015) |
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+ |
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+ 29 Mar 2015; Justin Lecher <jlec@g.o> +mafft-7.215.ebuild, |
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+ -files/mafft-6.240-mktemp.patch: |
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+ Version BUmp; drop obsolete patch |
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|
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19 Jul 2013; Justin Lecher <jlec@g.o> mafft-7.050.ebuild: |
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Keyword for ~-linux |
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@@ -103,4 +109,3 @@ |
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21 Oct 2006; Donnie Berkholz <dberkholz@g.o>; +metadata.xml, |
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+mafft-5.861.ebuild: |
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New package: Multiple sequence alignments using a variety of algorithms. |
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- |
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1.1 sci-biology/mafft/mafft-7.215.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/mafft-7.215.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mafft/mafft-7.215.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: mafft-7.215.ebuild |
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=================================================================== |
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# Copyright 1999-2015 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-7.215.ebuild,v 1.1 2015/03/29 14:48:58 jlec Exp $ |
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EAPI=5 |
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inherit eutils flag-o-matic multilib toolchain-funcs |
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|
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EXTENSIONS="-without-extensions" |
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|
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DESCRIPTION="Multiple sequence alignments using a variety of algorithms" |
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HOMEPAGE="http://mafft.cbrc.jp/alignment/software/index.html" |
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SRC_URI="http://mafft.cbrc.jp/alignment/software/${P}${EXTENSIONS}-src.tgz" |
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|
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LICENSE="BSD" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
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IUSE="threads" |
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|
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S="${WORKDIR}"/${P}${EXTENSIONS} |
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|
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src_prepare() { |
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# epatch "${FILESDIR}"/${PN}-7.037-respect.patch |
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use threads && append-cppflags -Denablemultithread |
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# sed "s:GENTOOLIBDIR:$(get_libdir):g" -i core/Makefile || die |
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sed -i -e "s/(PREFIX)\/man/(PREFIX)\/share\/man/" "${S}"/core/Makefile || die "sed failed" |
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sed \ |
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-e 's:$(LDFLAGS)::g' \ |
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-e 's:$(CC) -o $@:$(CC) $(LDFLAGS) -o $@:g' \ |
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-e 's:$(CC) -shared -o $@:$(CC) $(LDFLAGS) -shared -o $@:g' \ |
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-e '/INSTALL/s: -s : :g' \ |
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-i core/Makefile || die |
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} |
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|
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src_compile() { |
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cd core || die |
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emake \ |
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$(usex threads ENABLE_MULTITHREAD="-Denablemultithread" ENABLE_MULTITHREAD="") \ |
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PREFIX="${EPREFIX}"/usr \ |
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CC="$(tc-getCC)" \ |
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CFLAGS="${CFLAGS} -Wno-unused-result" |
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} |
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|
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src_test() { |
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export MAFFT_BINARIES="${S}"/core |
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cd test || die |
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bash ../core/mafft sample > test.fftns2 || die |
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bash ../core/mafft --maxiterate 100 sample > test.fftnsi || die |
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bash ../core/mafft --globalpair sample > test.gins1 || die |
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bash ../core/mafft --globalpair --maxiterate 100 sample > test.ginsi || die |
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bash ../core/mafft --localpair sample > test.lins1 || die |
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bash ../core/mafft --localpair --maxiterate 100 sample > test.linsi || die |
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|
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diff test.fftns2 sample.fftns2 || die |
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diff test.fftnsi sample.fftnsi || die |
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diff test.gins1 sample.gins1 || die |
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diff test.ginsi sample.ginsi || die |
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diff test.lins1 sample.lins1 || die |
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} |
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|
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src_install() { |
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dodoc readme |
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cd core || die |
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emake PREFIX="${ED}usr" install |
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} |
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