[gentoo-commits] repo/gentoo:master commit in: dev-python/aesara/files/, dev-python/aesara/

[Andrew Ammerlaan]

commit:     61c25a3e98e73fed146874d62db5809e770a3669
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 29 09:39:28 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sun Jan 29 09:41:23 2023 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=61c25a3e

dev-python/aesara: add 2.8.10

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 dev-python/aesara/Manifest                         |   1 +
 dev-python/aesara/aesara-2.8.10.ebuild             | 122 +++++++++++++++++++++
 .../aesara/files/aesara-2.8.10-fix-tuple.patch     |  19 ++++
 3 files changed, 142 insertions(+)

diff --git a/dev-python/aesara/Manifest b/dev-python/aesara/Manifest
index 48291baf84e1..74ef92d59b9f 100644
--- a/dev-python/aesara/Manifest
+++ b/dev-python/aesara/Manifest
@@ -1 +1,2 @@
+DIST aesara-rel-2.8.10.gh.tar.gz 4342183 BLAKE2B 3e6dcb362d613ce9fb621408d3d7c6f6d3f30e52fe39f484fbe6c9d834d59b428e736b13275d99b204774c719cc532fc42e877685b0639b344fa5b2965dfe602 SHA512 360419a79eb0571d431bb146e5fcf2d63a9c8b40e3ee0a31d7d38aeeceaa47da10ab3f640a4b4011f0a9b28438f20a0feb3ea64d07289d0e9513cb32d066820b
 DIST aesara-rel-2.8.9.gh.tar.gz 4351952 BLAKE2B ffdc3d33caba5cf5edd3dd15e62cd295dd23f944ac6d76461e9e43717a4126669391dadfee51c6117911dc4236e8787d3e9ab712a0fcbd1dcb137e64f9f994c4 SHA512 3fb4374899ab71366961a07c750f594505467cdab01b6851b36d1dd924b816117ebe488a6cae548650df393c8447de69e21ce2cf6eafe34e951b98f27c3a4f6c

diff --git a/dev-python/aesara/aesara-2.8.10.ebuild b/dev-python/aesara/aesara-2.8.10.ebuild
new file mode 100644
index 000000000000..4b8039b62529
--- /dev/null
+++ b/dev-python/aesara/aesara-2.8.10.ebuild
@@ -0,0 +1,122 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+# A whole bunch of test failures with 3.11
+PYTHON_COMPAT=( python3_{9..10} )
+
+inherit distutils-r1 multiprocessing optfeature
+
+MY_P=aesara-rel-${PV}
+DESCRIPTION="Library for operating on mathematical expressions with multi-dimensional arrays"
+HOMEPAGE="
+	https://github.com/aesara-devs/aesara/
+	https://pypi.org/project/aesara/
+"
+SRC_URI="
+	https://github.com/aesara-devs/aesara/archive/rel-${PV}.tar.gz
+		-> ${MY_P}.gh.tar.gz
+"
+S=${WORKDIR}/${MY_P}
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~riscv ~x86"
+
+RDEPEND="
+	dev-python/cons[${PYTHON_USEDEP}]
+	dev-python/etuples[${PYTHON_USEDEP}]
+	dev-python/logical-unification[${PYTHON_USEDEP}]
+	dev-python/minikanren[${PYTHON_USEDEP}]
+	dev-python/filelock[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/scipy[${PYTHON_USEDEP}]
+	dev-python/typing-extensions[${PYTHON_USEDEP}]
+"
+BDEPEND="
+	dev-vcs/git
+	dev-python/setuptools_scm[${PYTHON_USEDEP}]
+	test? (
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+	)
+"
+
+PATCHES=(
+	"${FILESDIR}"/aesara-2.6.5-compiledir-tid.patch
+	"${FILESDIR}"/aesara-2.8.10-fix-tuple.patch
+)
+
+distutils_enable_sphinx doc 'dev-python/sphinx_rtd_theme'
+distutils_enable_tests pytest
+
+src_prepare() {
+	# do not claim "bin" package (sic!)
+	rm bin/__init__.py || die
+	# setuptools_scm wants to read PV from git
+	touch setup.cfg || die
+	git init -q || die
+	git config --global user.email "larry@g.o" || die
+	git config --global user.name "Larry the Cow" || die
+	git add . || die
+	git commit -qm "init" || die
+	git tag -a "rel-${PV}" -m "rel-${PV}" || die
+	distutils-r1_src_prepare
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# speed tests are unreliable
+		tests/scan/test_basic.py::test_speed
+		tests/scan/test_basic.py::test_speed_rnn
+		tests/scan/test_basic.py::test_speed_batchrnn
+		tests/link/test_vm.py::test_speed
+		tests/link/test_vm.py::test_speed_lazy
+		tests/tensor/test_gc.py::test_merge_opt_runtime
+
+		# rounding problem?
+		# https://github.com/aesara-devs/aesara/issues/477
+		tests/tensor/test_math_scipy.py::TestGammaUBroadcast::test_good
+		tests/tensor/test_math_scipy.py::TestGammaUInplaceBroadcast::test_good
+
+		# Deprecation warning causes unexpected additional output
+		tests/tensor/test_basic.py::TestLongTensor::test_fit_int64
+
+		# dunno
+		tests/tensor/test_elemwise.py::TestDimShuffle::test_memory_leak
+		tests/tensor/signal/test_pool.py::TestDownsampleFactorMax::test_DownsampleFactorMaxGradGrad_grad
+
+		# TODO
+		tests/link/c/test_op.py::test_ExternalCOp_c_code_cache_version
+		tests/sparse/sandbox/test_sp.py::TestSP::test_multilayer_conv
+		tests/sparse/sandbox/test_sp.py::TestSP::test_maxpool
+
+		# TODO: Package pytest-benchmark
+		tests/scan/test_basic.py::TestExamples::test_reordering
+		tests/scan/test_basic.py::TestExamples::test_scan_as_tensor_on_gradients
+		tests/scan/test_basic.py::TestExamples::test_multiple_outs_taps
+		tests/scan/test_rewriting.py::TestPushOutAddScan::test_pregreedy_optimizer
+		tests/scan/test_rewriting.py::TestSaveMem::test_savemem_opt
+		tests/scan/test_basic.py::test_cython_performance
+	)
+	local EPYTEST_IGNORE=(
+		# we do not package jax or numba
+		tests/link/jax
+		tests/link/numba
+	)
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	local -x AESARA_FLAGS="cxx=${CXX}"
+	AESARA_FLAGS+=",config.gcc__cxxflags=\"${CXXFLAGS}\""
+	AESARA_FLAGS+=',compiledir_format="compiledir_%(thread_id)s"'
+
+	epytest -p xdist.plugin -n "$(makeopts_jobs)"
+	# clean up the compiledir, as it can grow pretty large
+	rm -r "${HOME}"/.aesara || die
+}
+
+pkg_postinst() {
+	optfeature "GPU code generation/execution on NVIDIA gpus" dev-util/nvidia-cuda-toolkit
+	optfeature "GPU/CPU code generation on CUDA and OpenCL devices" dev-libs/libgpuarray dev-python/pycuda
+}

diff --git a/dev-python/aesara/files/aesara-2.8.10-fix-tuple.patch b/dev-python/aesara/files/aesara-2.8.10-fix-tuple.patch
new file mode 100644
index 000000000000..7eb537d54286
--- /dev/null
+++ b/dev-python/aesara/files/aesara-2.8.10-fix-tuple.patch
@@ -0,0 +1,19 @@
+diff --git a/aesara/tensor/nnet/corr.py b/aesara/tensor/nnet/corr.py
+index e89054d..77ed344 100644
+--- a/aesara/tensor/nnet/corr.py
++++ b/aesara/tensor/nnet/corr.py
+@@ -692,12 +692,12 @@ class CorrMM(BaseCorrMM):
+             if kern.type.ndim != 4:
+                 raise TypeError("kern must be 4D tensor")
+ 
+-        out_shape = tuple(
++        out_shape = tuple([
+             1 if img.type.shape[0] == 1 else None,
+             1 if kern.type.shape[0] == 1 else None,
+             None,
+             None,
+-        )
++        ])
+         dtype = img.type.dtype
+         return Apply(self, [img, kern], [TensorType(dtype, shape=out_shape)()])
+