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jlec 12/07/04 10:09:26 |
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|
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Modified: ChangeLog |
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Added: seaview-4.3.3.ebuild |
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Log: |
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sci-biology/seaview: Version Bump imported from sci overlay, prepared by Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 |
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|
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(Portage version: 2.2.0_alpha115/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.41 sci-biology/seaview/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/ChangeLog?rev=1.41&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/ChangeLog?rev=1.41&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/ChangeLog?r1=1.40&r2=1.41 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v |
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retrieving revision 1.40 |
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retrieving revision 1.41 |
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diff -u -r1.40 -r1.41 |
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--- ChangeLog 20 Mar 2011 20:02:27 -0000 1.40 |
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+++ ChangeLog 4 Jul 2012 10:09:26 -0000 1.41 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/seaview |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.40 2011/03/20 20:02:27 jlec Exp $ |
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+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.41 2012/07/04 10:09:26 jlec Exp $ |
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+ |
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+*seaview-4.3.3 (04 Jul 2012) |
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+ |
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+ 04 Jul 2012; Justin Lecher <jlec@g.o> +seaview-4.3.3.ebuild: |
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+ Version Bump imported from sci overlay, prepared by Martin Mokrejs, #351005; |
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+ fixes also compilation with gcc47, #424727 |
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|
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20 Mar 2011; Justin Lecher <jlec@g.o> seaview-4.2.5.ebuild, |
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seaview-4.2.12.ebuild: |
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|
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1.1 sci-biology/seaview/seaview-4.3.3.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/seaview-4.3.3.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/seaview-4.3.3.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: seaview-4.3.3.ebuild |
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=================================================================== |
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# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-4.3.3.ebuild,v 1.1 2012/07/04 10:09:26 jlec Exp $ |
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|
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EAPI=4 |
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|
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inherit base eutils multilib toolchain-funcs |
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|
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DESCRIPTION="A graphical multiple sequence alignment editor" |
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HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" |
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SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz" |
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|
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LICENSE="public-domain" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="+xft" |
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|
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DEPEND=" |
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x11-libs/fltk:1 |
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xft? ( |
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x11-libs/libXft |
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x11-libs/fltk:1[xft] )" |
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RDEPEND="${DEPEND} |
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sci-biology/clustalw |
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|| ( sci-libs/libmuscle sci-biology/muscle ) |
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sci-biology/phyml" |
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|
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S="${WORKDIR}/${PN}" |
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|
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src_prepare() { |
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# respect CXXFLAGS (package uses them as CFLAGS) |
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sed \ |
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-e "s:^CXX.*:CXX = $(tc-getCXX):" \ |
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-e "s:\$(OPT):${CXXFLAGS}:" \ |
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-e "s:^OPT:#OPT:" \ |
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-e "s:^FLTK = /usr/include:FLTK = /usr/include/fltk-1:" \ |
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-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \ |
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-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \ |
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-e "s:^USE_XFT:#USE_XFT:" \ |
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-e "s:^#HELPFILE:HELPFILE:" \ |
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-e "s:/usr/share/doc/seaview/seaview.htm:/usr/share/seaview/seaview.htm:" \ |
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-e "s:^#PHYMLNAME:PHYMLNAME:" \ |
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-i Makefile || die "sed failed while editing Makefile" |
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|
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if use xft; then |
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sed \ |
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-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(pkg-config --cflags xft):" \ |
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-e "s:-lXft:$(pkg-config --libs xft):" \ |
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-i Makefile || die "sed failed while editing Makefile to enable xft" |
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else |
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sed -i -e "s:-lXft::" Makefile || die |
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fi |
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cd FL || die |
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ln -sf . FL |
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base_src_prepare |
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} |
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|
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src_install() { |
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dobin seaview |
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|
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# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile |
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insinto /usr/share/seaview |
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doins example.nxs seaview.html |
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|
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insinto /usr/share/seaview/images |
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doins seaview.xpm |
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|
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make_desktop_entry seaview Seaview |
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|
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doman seaview.1 |
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} |
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