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commit: 9942cc6d89af0ff581857128d04cd32071880686 |
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Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Thu Dec 31 21:21:05 2015 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Thu Dec 31 21:21:05 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9942cc6d |
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|
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sci-biology/trinityrnaseq: do not install bundled GAL but DEPEND on it via external package as sci-biology/GAL |
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|
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sci-biology/trinityrnaseq/ChangeLog | 5 +++++ |
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sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild | 3 ++- |
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sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild | 3 ++- |
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3 files changed, 9 insertions(+), 2 deletions(-) |
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|
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diff --git a/sci-biology/trinityrnaseq/ChangeLog b/sci-biology/trinityrnaseq/ChangeLog |
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index 405ac83..29796cf 100644 |
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--- a/sci-biology/trinityrnaseq/ChangeLog |
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+++ b/sci-biology/trinityrnaseq/ChangeLog |
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@@ -2,6 +2,11 @@ |
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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# $Id$ |
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|
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+ 31 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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+ trinityrnaseq-2.0.6.ebuild, trinityrnaseq-2.1.1.ebuild: |
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+ sci-biology/trinityrnaseq: do not install bundled GAL but DEPEND on it via |
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+ external package as sci-biology/GAL |
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+ |
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*trinityrnaseq-2.1.1 (20 Nov 2015) |
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|
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20 Nov 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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|
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diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild |
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index 9d8558a..44f2843 100644 |
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--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild |
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+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.0.6.ebuild |
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@@ -24,6 +24,7 @@ RDEPEND="${DEPEND} |
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sci-biology/parafly |
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=sci-biology/jellyfish-2.1.4 |
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sci-biology/samtools |
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+ >=sci-biology/GAL-0.2.1 |
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dev-perl/IO-All" |
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# ReleaseNotes mentions that <sci-biology/samtools-1.1 is needed |
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# version of bundled jellyfish is 2.1.4 |
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@@ -43,7 +44,7 @@ src_install(){ |
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dodoc trinity-plugins/fstrozzi-Fastool-7c3e034f05/README.md |
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# |
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insinto /usr/share/"${PN}"/util |
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- rm -f util/fasta_tool |
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+ rm -f trinity-plugins/GAL_0.2.1 util/fasta_tool |
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doins -r util/* |
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# |
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dobin Inchworm/bin/* |
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|
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diff --git a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild b/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild |
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index 0d5ba53..49d6b89 100644 |
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--- a/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild |
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+++ b/sci-biology/trinityrnaseq/trinityrnaseq-2.1.1.ebuild |
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@@ -25,6 +25,7 @@ RDEPEND="${DEPEND} |
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>=sci-libs/htslib-1.2.1 |
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<=sci-biology/samtools-1.1 |
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>=sci-biology/trimmomatic-0.32 |
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+ >=sci-biology/GAL-0.2.1 |
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dev-perl/IO-All" |
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# ReleaseNotes mentions that <sci-biology/samtools-1.1 is needed |
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# version of bundled jellyfish is 2.1.4 |
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@@ -52,7 +53,7 @@ src_install(){ |
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dodoc trinity-plugins/fstrozzi-Fastool-7c3e034f05/README.md |
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# |
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insinto /usr/share/"${PN}"/util |
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- rm -f util/fasta_tool |
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+ rm -f trinity-plugins/GAL_0.2.1 util/fasta_tool |
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doins -r util/* |
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# |
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dobin Inchworm/bin/* |
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