[gentoo-commits] gentoo-x86 commit in sci-libs/libghemical/files: libghemical-2.98-gcc43.patch

[Jeffrey Gardner (je_fro)]

je_fro      08/11/30 01:00:00

  Added:                libghemical-2.98-gcc43.patch
  Log:
  Fix compilation, thanks to Arch guy abhidg at http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html
  (Portage version: 2.1.6_rc2/cvs/Linux 2.6.27-gentoo-r4 x86_64)

Revision  Changes    Path
1.1                  sci-libs/libghemical/files/libghemical-2.98-gcc43.patch

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-libs/libghemical/files/libghemical-2.98-gcc43.patch?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-libs/libghemical/files/libghemical-2.98-gcc43.patch?rev=1.1&content-type=text/plain

Index: libghemical-2.98-gcc43.patch
===================================================================
--- src/atom.h.orig	2008-06-09 03:59:34.262567972 -0500
+++ src/atom.h	2008-06-09 04:00:07.136698792 -0500
@@ -10,6 +10,8 @@
 #ifndef ATOM_H
 #define ATOM_H
 
+#include <cstdlib>
+#include <cstring>
 #include "libghemicaldefine.h"
 #include "libghemicalconfig2.h"
 
--- src/notice.h.orig	2008-06-09 04:00:24.472509840 -0500
+++ src/notice.h	2008-06-09 04:00:44.608265748 -0500
@@ -10,6 +10,7 @@
 #ifndef NOTICE_H
 #define NOTICE_H
 
+#include <cstring>
 #include "libghemicaldefine.h"
 #include "libghemicalconfig2.h"
 
--- src/sasaeval.cpp	2008-08-01 09:39:01.000000000 +0530
+++ src/sasaeval.cpp	2008-08-01 09:40:33.000000000 +0530
@@ -21,6 +21,9 @@
 #include "sasaeval.h"

 #include "engine.h"
+#include <vector>
+#include <algorithm>
+using namespace std;

 // the surface area code apparently contains some bugs, since it sometimes
 // crashes. another possibility is that the surface area math contains some
--- src/sasaeval.h	2008-07-31 00:40:08.000000000 +0530
+++ src/sasaeval.h	2008-08-01 09:40:04.000000000 +0530
@@ -24,6 +24,7 @@
 #define SASAEVAL_H

 #include "typedef.h"
+#include <stdlib.h>

 struct cg_nbt3_nl;	// SASA neighbor list.