[gentoo-commits] repo/gentoo:master commit in: sci-biology/biopython/

[David Seifert]

commit:     73c3e34900c4f49a05e4445033a21900b04e626e
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Dec 29 08:53:09 2019 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Dec 29 08:53:09 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=73c3e349

sci-biology/biopython: Remove old

Package-Manager: Portage-2.3.83, Repoman-2.3.20
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/biopython/Manifest              |  2 -
 sci-biology/biopython/biopython-1.68.ebuild | 55 ----------------------------
 sci-biology/biopython/biopython-1.71.ebuild | 57 -----------------------------
 3 files changed, 114 deletions(-)

diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 02d90810dc5..ee3ffae9c3f 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,3 +1 @@
-DIST biopython-1.68.tar.gz 14445813 BLAKE2B 566931c4e522e95278f7f6a9dc07ecc091dc54b69cdea8bb07603339af4f1fd38e3df87482e97729acb776dd2df19a4e61d49ee7608ec5cb0f24966e28c2e3dd SHA512 0ca994475654bb68ff326c8e86cbd4547cd87b42e1633dda039ad668e1298884b22e169f6b25ab514e929861334a93b7db6d057a3486cea9997ca2de95c61a69
-DIST biopython-1.71.tar.gz 16031832 BLAKE2B 2062065b77fc35ea8a3f09ec967482c233a6e0bbfc7d09187ff5e892848b45fa7bd6d7b6027b38c3d4c9a9c601785521fa7edb91fa960b46c8e49aed91b1f5dc SHA512 003955e92295e98526c88abb573db9bdc37877fc41395551b541e7106ffa603327a36c6f4d999838c0be38b378901235c9dbd7cb7fc25c14a5d7001939fe23bd
 DIST biopython-1.73.tar.gz 15715102 BLAKE2B b2c40f9ed02681f19607c88f91b469784985acefc6e81770a54e5c13c715915344bc7fd72e4a88ae50879a2463965ac6d0d04c6d263908887028d1e065620b95 SHA512 d067330ef8e25ca6881b56f4e5e89e16a816c89760473e2f32a6236ab202f805294650aa944f0b098987425bcb65727317da7a26deb4d4937f02b00123ea9a8f

diff --git a/sci-biology/biopython/biopython-1.68.ebuild b/sci-biology/biopython/biopython-1.68.ebuild
deleted file mode 100644
index f76da59c1b8..00000000000
--- a/sci-biology/biopython/biopython-1.68.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 python3_5 pypy )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ https://pypi.org/project/biopython/"
-SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
-	dev-python/matplotlib[$(python_gen_usedep 'python*')]
-	dev-python/networkx[$(python_gen_usedep 'python*')]
-	dev-python/numpy[$(python_gen_usedep 'python*')]
-	dev-python/rdflib[$(python_gen_usedep 'python*')]
-	dev-python/pygraphviz[$(python_gen_usedep 'python2*')]
-	dev-python/reportlab[$(python_gen_usedep 'python*')]
-	dev-python/pydot[$(python_gen_usedep 'python2*')]
-	"
-DEPEND="${RDEPEND}
-	sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
-
-python_test() {
-	distutils_install_for_testing
-	cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die
-	cd "${TEST_DIR}"/lib/Tests || die
-	rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die
-	${PYTHON} run_tests.py --offline --verbose || die
-}
-
-python_install_all() {
-	distutils-r1_python_install_all
-
-	dodir /usr/share/${PN}
-	cp -r --preserve=mode Scripts Tests "${ED%/}"/usr/share/${PN} || die
-}
-
-pkg_postinst() {
-	elog "For database support you need to install:"
-	optfeature "MySQL" dev-python/mysql-python
-	optfeature "PostGreSQL" dev-python/psycopg
-	elog
-	elog "Some applications need extra packages:"
-	optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss
-}

diff --git a/sci-biology/biopython/biopython-1.71.ebuild b/sci-biology/biopython/biopython-1.71.ebuild
deleted file mode 100644
index 8b9a0cd7112..00000000000
--- a/sci-biology/biopython/biopython-1.71.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 python3_{5,6} )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="https://www.biopython.org/ https://pypi.org/project/biopython/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
-	dev-python/matplotlib[${PYTHON_USEDEP}]
-	dev-python/networkx[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
-	dev-python/rdflib[${PYTHON_USEDEP}]
-	dev-python/pygraphviz[${PYTHON_USEDEP}]
-	dev-python/reportlab[${PYTHON_USEDEP}]
-	dev-python/pydot[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-	sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
-
-python_test() {
-	distutils_install_for_testing
-	cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die
-	cd "${TEST_DIR}"/lib/Tests || die
-	rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die
-	"${EPYTHON}" run_tests.py --offline --verbose || die
-}
-
-python_install_all() {
-	# remove files causing ecompressdir to fail
-	rm Doc/examples/ls_orchid.gbk.bz2 || die
-
-	distutils-r1_python_install_all
-
-	dodir /usr/share/${PN}
-	cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
-
-pkg_postinst() {
-	elog "For database support you need to install:"
-	optfeature "MySQL" dev-python/mysql-python
-	optfeature "PostGreSQL" dev-python/psycopg
-
-	elog "Some applications need extra packages:"
-	optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss
-}