[gentoo-commits] gentoo-x86 commit in sci-chemistry/autodock: ChangeLog autodock-4.2.3-r1.ebuild autodock-4.0.1-r1.ebuild autodock-4.2.3.ebuild autodock-4.0.1.ebuild

[Justin Lecher (jlec)]

jlec        10/06/25 10:41:06

  Modified:             ChangeLog
  Added:                autodock-4.2.3-r1.ebuild
  Removed:              autodock-4.0.1-r1.ebuild autodock-4.2.3.ebuild
                        autodock-4.0.1.ebuild
  Log:
  Fixed installation issue when csh is not present, #303463; fix src_test, #320345, removed old, fixed PYTHON ABIs stuff
  (Portage version: 2.2_rc67/cvs/Linux x86_64)

Revision  Changes    Path
1.8                  sci-chemistry/autodock/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/ChangeLog?rev=1.8&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/ChangeLog?rev=1.8&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/ChangeLog?r1=1.7&r2=1.8

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog	4 Feb 2010 13:03:15 -0000	1.7
+++ ChangeLog	25 Jun 2010 10:41:06 -0000	1.8
@@ -1,6 +1,14 @@
 # ChangeLog for sci-chemistry/autodock
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.7 2010/02/04 13:03:15 alexxy Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.8 2010/06/25 10:41:06 jlec Exp $
+
+*autodock-4.2.3-r1 (25 Jun 2010)
+
+  25 Jun 2010; Justin Lecher <jlec@g.o> -autodock-4.0.1.ebuild,
+  -autodock-4.0.1-r1.ebuild, -autodock-4.2.3.ebuild,
+  +autodock-4.2.3-r1.ebuild:
+  Fixed installation issue when csh is not present, #303463; fix src_test,
+  #320345; removed old, fixed PYTHON ABIs stuff
 
 *autodock-4.2.3 (04 Feb 2010)
 



1.1                  sci-chemistry/autodock/autodock-4.2.3-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild?rev=1.1&content-type=text/plain

Index: autodock-4.2.3-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild,v 1.1 2010/06/25 10:41:06 jlec Exp $

EAPI="2"

PYTHON_DEPEND="test? 2"

inherit autotools eutils python

MY_PN="autodocksuite"
MY_P="${MY_PN}-${PV}"

DESCRIPTION="A suite of automated docking tools"
HOMEPAGE="http://autodock.scripps.edu/"
SRC_URI="mirror://gentoo/${MY_PN}/${MY_P}-src.tar.gz"

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

S="${WORKDIR}/src"

pkg_setup() {
	python_set_active_version 2
}

src_prepare() {
	sed -i -e "s/\tcsh/\tsh/" \
		autodock/Makefile.am autogrid/Makefile.am || die "sed failed"
	for i in autodock autogrid; do
		pushd $i &>/dev/null
		eautoreconf
		popd &>/dev/null
	done
}

src_configure() {
	for i in autodock autogrid; do
		pushd $i &>/dev/null
		econf
		popd &>/dev/null
	done
}

src_compile() {
	emake -C autodock || die
	emake -C autogrid || die
}

src_install() {
	dobin "${S}"/autodock/autodock4 "${S}"/autogrid/autogrid4 \
		|| die "Failed to install autodock binary."

	insinto "/usr/share/autodock"
	doins "${S}"/autodock/{AD4_parameters.dat,AD4_PARM99.dat} \
		 || die "Failed to install shared files."

	dodoc "${S}"/autodock/{AUTHORS,ChangeLog,NEWS,README} \
		|| die "Failed to install documentation."
}

src_test() {
	einfo "Testing autodock"
	cd "${S}/autodock/Tests"
	cp ../*.dat .
	$(PYTHON) test_autodock4.py || die "AutoDock tests failed."
	einfo "Testing autogrid"
	cd "${S}/autogrid/Tests"
	$(PYTHON) test_autogrid4.py || die "AutoGrid tests failed."
}

pkg_postinst() {
	einfo "The AutoDock development team requests all users to fill out the"
	einfo "registration form at:"
	einfo
	einfo "\thttp://autodock.scripps.edu/downloads/autodock-registration"
	einfo
	einfo "The number of unique users of AutoDock is used by Prof. Arthur J."
	einfo "Olson and the Scripps Research Institude to support grant"
	einfo "applications."
}