[gentoo-commits] repo/gentoo:master commit in: dev-python/pandas/

[Michał Górny]

commit:     badb95ac5f82a3f0b3fe0c302e4cbe02d9e01c83
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Sun Apr  3 08:17:26 2022 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Apr  3 10:35:10 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=badb95ac

dev-python/pandas: Bump to 1.4.2

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/pandas/Manifest            |   1 +
 dev-python/pandas/pandas-1.4.2.ebuild | 201 ++++++++++++++++++++++++++++++++++
 2 files changed, 202 insertions(+)

diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest
index d7a58f4e67ea..b67f711eedc7 100644
--- a/dev-python/pandas/Manifest
+++ b/dev-python/pandas/Manifest
@@ -1 +1,2 @@
 DIST pandas-1.4.1.tar.gz 4941369 BLAKE2B ce85253b32c3be6baad74e2bca98d24b43f42c311ffad128615b711e461a76067035e238cf1693eed12d4ca8e354aef56f711e45cd934a4af6222f4727838b1e SHA512 2d8ba8f3152b5bd5495e406ce21d896342ef77473ed3c0207f77b6503c3f4353bbeb5ec573696eb6748e65e956d9d1b97d314a136104151ecb5ba822afa72422
+DIST pandas-1.4.2.tar.gz 4940242 BLAKE2B b44c9e46458b4e2919b2d215c8678601ef0976118197172ddc74fa712cf07b02cdb09b79940e90bf6907a45e7e3c63615292f7141a4fb8ed4ae22a36decd1e39 SHA512 6406241e30e9ed386610dd90bbb7407cfe3e94ff20c8fd1241aa75288894666f06e59f7c74b5f916080a3745254ba22ec9dad1195f040b613639b5712aced571

diff --git a/dev-python/pandas/pandas-1.4.2.ebuild b/dev-python/pandas/pandas-1.4.2.ebuild
new file mode 100644
index 000000000000..4e3961affad0
--- /dev/null
+++ b/dev-python/pandas/pandas-1.4.2.ebuild
@@ -0,0 +1,201 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_REQ_USE="threads(+)"
+
+VIRTUALX_REQUIRED="manual"
+
+inherit distutils-r1 multiprocessing optfeature virtualx
+
+DESCRIPTION="Powerful data structures for data analysis and statistics"
+HOMEPAGE="https://pandas.pydata.org/ https://github.com/pandas-dev/pandas/"
+SRC_URI="
+	https://github.com/pandas-dev/pandas/releases/download/v${PV}/${P}.tar.gz
+"
+S="${WORKDIR}/${P/_/}"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
+IUSE="doc full-support minimal test X"
+RESTRICT="!test? ( test )"
+
+RECOMMENDED_DEPEND="
+	>=dev-python/bottleneck-1.2.1[${PYTHON_USEDEP}]
+	>=dev-python/numexpr-2.7.0[${PYTHON_USEDEP}]
+"
+
+# TODO: add pandas-gbq to the tree
+OPTIONAL_DEPEND="
+	dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+	dev-python/blosc[${PYTHON_USEDEP}]
+	|| (
+		dev-python/html5lib[${PYTHON_USEDEP}]
+		dev-python/lxml[${PYTHON_USEDEP}]
+	)
+	dev-python/jinja[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	|| (
+		dev-python/openpyxl[${PYTHON_USEDEP}]
+		dev-python/xlsxwriter[${PYTHON_USEDEP}]
+	)
+	>=dev-python/pytables-3.2.1[${PYTHON_USEDEP}]
+	>=dev-python/xarray-0.12.3[${PYTHON_USEDEP}]
+	>=dev-python/sqlalchemy-1.3.0[${PYTHON_USEDEP}]
+	>=dev-python/xlrd-1.2.0[${PYTHON_USEDEP}]
+	>=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}]
+	!hppa? (
+		dev-python/statsmodels[${PYTHON_USEDEP}]
+		>=dev-python/scipy-1.1[${PYTHON_USEDEP}]
+	)
+	X? (
+		|| (
+			dev-python/PyQt5[${PYTHON_USEDEP}]
+			x11-misc/xclip
+			x11-misc/xsel
+		)
+	)
+"
+COMMON_DEPEND="
+	>=dev-python/numpy-1.21.0[${PYTHON_USEDEP}]
+	>=dev-python/python-dateutil-2.8.1-r3[${PYTHON_USEDEP}]
+	>=dev-python/pytz-2020.1[${PYTHON_USEDEP}]
+"
+DEPEND="
+	${COMMON_DEPEND}
+	>=dev-python/cython-0.29.24[${PYTHON_USEDEP}]
+	doc? (
+		${VIRTUALX_DEPEND}
+		app-text/pandoc
+		dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+		dev-python/html5lib[${PYTHON_USEDEP}]
+		dev-python/ipython[${PYTHON_USEDEP}]
+		dev-python/lxml[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/nbsphinx[${PYTHON_USEDEP}]
+		>=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
+		>=dev-python/openpyxl-1.6.1[${PYTHON_USEDEP}]
+		>=dev-python/pytables-3.0.0[${PYTHON_USEDEP}]
+		dev-python/pytz[${PYTHON_USEDEP}]
+		dev-python/rpy[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+		dev-python/xlrd[${PYTHON_USEDEP}]
+		dev-python/xlwt[${PYTHON_USEDEP}]
+		dev-python/scipy[${PYTHON_USEDEP}]
+		x11-misc/xclip
+	)
+	test? (
+		${VIRTUALX_DEPEND}
+		${RECOMMENDED_DEPEND}
+		${OPTIONAL_DEPEND}
+		dev-python/beautifulsoup4[${PYTHON_USEDEP}]
+		>=dev-python/hypothesis-5.5.3[${PYTHON_USEDEP}]
+		dev-python/openpyxl[${PYTHON_USEDEP}]
+		dev-python/pymysql[${PYTHON_USEDEP}]
+		>=dev-python/pytest-6[${PYTHON_USEDEP}]
+		>=dev-python/pytest-xdist-1.31[${PYTHON_USEDEP}]
+		dev-python/psycopg:2[${PYTHON_USEDEP}]
+		dev-python/xlsxwriter[${PYTHON_USEDEP}]
+		x11-misc/xclip
+		x11-misc/xsel
+	)
+"
+# dev-python/statsmodels invokes a circular dep
+#  hence rm from doc? ( ), again
+RDEPEND="
+	${COMMON_DEPEND}
+	!minimal? ( ${RECOMMENDED_DEPEND} )
+	full-support? ( ${OPTIONAL_DEPEND} )
+"
+
+python_prepare_all() {
+	local PATCHES=(
+		# https://github.com/pandas-dev/pandas/issues/44980
+		"${FILESDIR}"/pandas-1.4.0-distutils-hack-assertion.patch
+	)
+
+	# Prevent un-needed download during build
+	sed -e "/^              'sphinx.ext.intersphinx',/d" \
+		-i doc/source/conf.py || die
+
+	# requires package installed
+	sed -e '/extra_compile_args =/s:"-Werror"::' \
+		-i setup.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	distutils-r1_python_compile -j1
+}
+
+python_compile_all() {
+	# To build docs the need be located in $BUILD_DIR,
+	# else PYTHONPATH points to unusable modules.
+	if use doc; then
+		cd "${BUILD_DIR}"/lib || die
+		cp -ar "${S}"/doc . && cd doc || die
+		LANG=C PYTHONPATH=. virtx ${EPYTHON} make.py html
+	fi
+}
+
+src_test() {
+	virtx distutils-r1_src_test
+}
+
+python_test() {
+	local EPYTEST_DESELECT=(
+		# test for rounding errors, fails if we have better precision
+		# e.g. on amd64 with FMA or on arm64
+		# https://github.com/pandas-dev/pandas/issues/38921
+		pandas/tests/window/test_rolling.py::test_rolling_var_numerical_issues
+
+		# TODO
+		pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated
+		pandas/tests/api/test_api.py::TestTesting::test_util_testing_deprecated_direct
+
+		# TODO: these require a running db server
+		pandas/tests/io/test_sql.py::TestMySQLAlchemy
+		pandas/tests/io/test_sql.py::TestMySQLAlchemyConn
+		pandas/tests/io/test_sql.py::TestPostgreSQLAlchemy
+		pandas/tests/io/test_sql.py::TestPostgreSQLAlchemyConn
+	)
+
+	local -x LC_ALL=C.UTF-8
+	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+	"${EPYTHON}" -c "import pandas; pandas.show_versions()" || die
+	epytest pandas --skip-slow --skip-network -m "not single" \
+		-n "$(makeopts_jobs "${MAKEOPTS}" "$(get_nproc)")" ||
+		die "Tests failed with ${EPYTHON}"
+}
+
+python_install_all() {
+	if use doc; then
+		dodoc -r "${BUILD_DIR}"/lib/doc/build/html
+		einfo "An initial build of docs is absent of references to statsmodels"
+		einfo "due to circular dependency. To have them included, emerge"
+		einfo "statsmodels next and re-emerge pandas with USE doc"
+	fi
+
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck
+	optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1"
+	optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml
+	optfeature "for msgpack compression using blosc" dev-python/blosc
+	optfeature "Template engine for conditional HTML formatting" dev-python/jinja
+	optfeature "Plotting support" dev-python/matplotlib
+	optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.0" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt
+	optfeature "necessary for HDF5-based storage" ">=dev-python/pytables-3.2.1"
+	optfeature "R I/O support" dev-python/rpy
+	optfeature "Needed for parts of pandas.stats" dev-python/statsmodels
+	optfeature "SQL database support" ">=dev-python/sqlalchemy-1.3.0"
+	optfeature "miscellaneous statistical functions" dev-python/scipy
+	optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/pygtk x11-misc/xclip x11-misc/xsel
+}