Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-chemistry/coot/files/, sci-chemistry/coot/
Date: Fri, 29 Apr 2011 10:05:59
Message-Id: f0c8b800774b3d554c462bd55f2901734108277a.jlec@gentoo
1 commit: f0c8b800774b3d554c462bd55f2901734108277a
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Thu Apr 28 08:39:59 2011 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Thu Apr 28 08:39:59 2011 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f0c8b800
7
8 Fixed underlinking problems
9
10 (Portage version: 2.2.0_alpha30/git/Linux x86_64, signed Manifest commit with key 70EB7916)
11
12 ---
13 sci-chemistry/coot/ChangeLog | 4 ++++
14 sci-chemistry/coot/coot-9999.ebuild | 1 +
15 sci-chemistry/coot/files/9999-gl.patch | 10 ++++++++++
16 sci-chemistry/coot/files/9999-lidia.patch | 19 +++++++++++++++----
17 4 files changed, 30 insertions(+), 4 deletions(-)
18
19 diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog
20 index c44d9a6..accf687 100644
21 --- a/sci-chemistry/coot/ChangeLog
22 +++ b/sci-chemistry/coot/ChangeLog
23 @@ -2,6 +2,10 @@
24 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
25 # $Header: $
26
27 + 28 Apr 2011; Justin Lecher <jlec@g.o> +files/9999-gl.patch,
28 + files/9999-lidia.patch, coot-9999.ebuild:
29 + Fixed underlinking problems
30 +
31 28 Apr 2011; Justin Lecher <jlec@g.o> -files/9999-gsl.patch,
32 -files/9999-openmp.patch, -files/9999-rappermc.patch,
33 -files/fix-namespace-error.patch, -files/glib.m4, -files/gtk.m4:
34
35 diff --git a/sci-chemistry/coot/coot-9999.ebuild b/sci-chemistry/coot/coot-9999.ebuild
36 index f9481c4..e8f1076 100644
37 --- a/sci-chemistry/coot/coot-9999.ebuild
38 +++ b/sci-chemistry/coot/coot-9999.ebuild
39 @@ -75,6 +75,7 @@ PATCHES=(
40 "${FILESDIR}"/${PV}-goocanvas.patch
41 "${FILESDIR}"/${PV}-clipper.patch
42 "${FILESDIR}"/${PV}-include.patch
43 + "${FILESDIR}"/${PV}-gl.patch
44 )
45
46 src_unpack() {
47
48 diff --git a/sci-chemistry/coot/files/9999-gl.patch b/sci-chemistry/coot/files/9999-gl.patch
49 new file mode 100644
50 index 0000000..bbd858c
51 --- /dev/null
52 +++ b/sci-chemistry/coot/files/9999-gl.patch
53 @@ -0,0 +1,10 @@
54 +Index: coot-surface/Makefile.am
55 +===================================================================
56 +--- coot-surface/Makefile.am (revision 3478)
57 ++++ coot-surface/Makefile.am (working copy)
58 +@@ -29,4 +29,4 @@
59 +
60 + libcoot_surface_la_LIBADD = \
61 + $(top_builddir)/surface/libccp4mg-surface.la \
62 +- $(GLUT_LIBS) $(CLIPPER_LIBS) $(MMDB_LIBS)
63 ++ $(GLUT_LIBS) $(CLIPPER_LIBS) $(MMDB_LIBS) -lGL
64
65 diff --git a/sci-chemistry/coot/files/9999-lidia.patch b/sci-chemistry/coot/files/9999-lidia.patch
66 index 5b5039c..0ca154c 100644
67 --- a/sci-chemistry/coot/files/9999-lidia.patch
68 +++ b/sci-chemistry/coot/files/9999-lidia.patch
69 @@ -1,10 +1,10 @@
70 Index: lbg/Makefile.am
71 ===================================================================
72 ---- lbg/Makefile.am (revision 3406)
73 +--- lbg/Makefile.am (revision 3478)
74 +++ lbg/Makefile.am (working copy)
75 -@@ -25,6 +25,12 @@
76 - lbg-search.cc residue-circles.cc rdkit-interface.cc \
77 - flev-annotations.cc
78 +@@ -32,6 +32,12 @@
79 + $(top_builddir)/utils/libcoot-utils.la \
80 + $(CLIPPER_LIBS) $(MMDB_LIBS) $(GSL_LIBS) $(RDKIT_LIBS) $(GOOCANVAS_LIBS) $(GTK_LIBS)
81
82 +libcoot_lidia_la_LIBADD = \
83 + $(top_builddir)/coot-utils/libcoot-coord-utils.la \
84 @@ -15,3 +15,14 @@ Index: lbg/Makefile.am
85 lidia_SOURCES = lidia-main.cc lbg-callbacks-outer.cc
86
87 include_HEADERS = lbg.hh wmolecule.hh rdkit-interface.hh flev-annotations.hh
88 +Index: lidia-core/Makefile.am
89 +===================================================================
90 +--- lidia-core/Makefile.am (revision 3478)
91 ++++ lidia-core/Makefile.am (working copy)
92 +@@ -29,3 +29,6 @@
93 +
94 + libcoot_lidia_core_la_SOURCES = lbg-molfile.cc lig-build.cc
95 +
96 ++libcoot_lidia_core_la_LIBADD = \
97 ++ $(top_builddir)/geometry/libcoot-geometry.la \
98 ++ $(MMDB_LIBS)