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jlec 15/03/29 14:30:37 |
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Modified: fasttree-2.1.7.ebuild ChangeLog |
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Added: fasttree-2.1.8.ebuild |
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Removed: fasttree-2.0.1.ebuild |
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Log: |
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Version BUmp; drop old |
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|
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(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!) |
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|
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Revision Changes Path |
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1.3 sci-biology/fasttree/fasttree-2.1.7.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild?rev=1.3&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild?rev=1.3&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild?r1=1.2&r2=1.3 |
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|
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Index: fasttree-2.1.7.ebuild |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild,v |
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retrieving revision 1.2 |
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retrieving revision 1.3 |
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diff -u -r1.2 -r1.3 |
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--- fasttree-2.1.7.ebuild 29 Jan 2015 21:21:10 -0000 1.2 |
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+++ fasttree-2.1.7.ebuild 29 Mar 2015 14:30:36 -0000 1.3 |
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@@ -1,6 +1,6 @@ |
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# Copyright 1999-2015 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild,v 1.2 2015/01/29 21:21:10 mgorny Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.7.ebuild,v 1.3 2015/03/29 14:30:36 jlec Exp $ |
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|
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EAPI=5 |
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@@ -23,6 +23,8 @@ |
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DOCS=( README ) |
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+PATCHES=( "${FILESDIR}"/${P}-format-security.patch ) |
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+ |
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src_unpack() { |
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mkdir "${S}" || die |
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cd "${S}" || die |
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1.6 sci-biology/fasttree/ChangeLog |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/ChangeLog?rev=1.6&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/ChangeLog?rev=1.6&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/ChangeLog?r1=1.5&r2=1.6 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v |
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retrieving revision 1.5 |
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retrieving revision 1.6 |
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diff -u -r1.5 -r1.6 |
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--- ChangeLog 29 Jan 2015 21:21:10 -0000 1.5 |
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+++ ChangeLog 29 Mar 2015 14:30:36 -0000 1.6 |
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@@ -1,6 +1,14 @@ |
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# ChangeLog for sci-biology/fasttree |
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v 1.5 2015/01/29 21:21:10 mgorny Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/ChangeLog,v 1.6 2015/03/29 14:30:36 jlec Exp $ |
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+ |
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+*fasttree-2.1.8 (29 Mar 2015) |
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+ |
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+ 29 Mar 2015; Justin Lecher <jlec@g.o> +fasttree-2.1.8.ebuild, |
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+ +files/fasttree-2.1.7-format-security.patch, |
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+ +files/fasttree-2.1.8-format-security.patch, -fasttree-2.0.1.ebuild, |
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+ -files/fasttree-2.0.1-asneeded.patch, fasttree-2.1.7.ebuild: |
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+ Version BUmp; drop old |
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|
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29 Jan 2015; Michał Górny <mgorny@g.o> fasttree-2.1.7.ebuild: |
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Switch to CPU_FLAGS_X86. |
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1.1 sci-biology/fasttree/fasttree-2.1.8.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.8.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/fasttree/fasttree-2.1.8.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: fasttree-2.1.8.ebuild |
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=================================================================== |
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# Copyright 1999-2015 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/fasttree/fasttree-2.1.8.ebuild,v 1.1 2015/03/29 14:30:36 jlec Exp $ |
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|
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EAPI=5 |
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|
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inherit cmake-utils |
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DESCRIPTION="Fast inference of approximately-maximum-likelihood phylogenetic trees" |
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HOMEPAGE="http://www.microbesonline.org/fasttree/" |
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SRC_URI=" |
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http://www.microbesonline.org/fasttree/FastTree-${PV}.c |
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http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-${PV}.c |
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http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-${PV}.tar.gz |
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" |
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|
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LICENSE="GPL-2" |
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SLOT="0" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="double-precision openmp cpu_flags_x86_sse3" |
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REQUIRED_USE="?? ( double-precision cpu_flags_x86_sse3 )" |
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DOCS=( README ) |
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PATCHES=( "${FILESDIR}"/${P}-format-security.patch ) |
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src_unpack() { |
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mkdir "${S}" || die |
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cd "${S}" || die |
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unpack ${A} |
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cp "${DISTDIR}"/{FastTreeUPGMA-${PV}.c,FastTree-${PV}.c} . || die |
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} |
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|
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src_prepare() { |
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cp "${FILESDIR}"/CMakeLists.txt . || die |
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cmake-utils_src_prepare |
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} |
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|
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src_configure() { |
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local mycmakeargs=( |
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-DVERSION="${PV}" |
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$(cmake-utils_use_has cpu_flags_x86_sse3 sse3) |
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$(cmake-utils_use_use openmp) |
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$(cmake-utils_use_use double-precision double) |
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) |
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cmake-utils_src_configure |
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} |
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