[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/openbabel/files/, sci-chemistry/openbabel/

[Andreas Sturmlechner]

commit:     21c3fd3140d7a6d0804ade3b238998a1bb4f2abf
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Sun Nov  7 12:15:55 2021 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Sun Nov  7 15:41:41 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=21c3fd31

sci-chemistry/openbabel: Drop 2.4.1-r1

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>

 .../openbabel-2.3.2-gcc-6_and_7-backport.patch     |  13 ---
 .../openbabel/files/openbabel-2.4.1-gcc-8.patch    |  15 ---
 sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild  | 102 ---------------------
 3 files changed, 130 deletions(-)

diff --git a/sci-chemistry/openbabel/files/openbabel-2.3.2-gcc-6_and_7-backport.patch b/sci-chemistry/openbabel/files/openbabel-2.3.2-gcc-6_and_7-backport.patch
deleted file mode 100644
index e23dc6020ee..00000000000
--- a/sci-chemistry/openbabel/files/openbabel-2.3.2-gcc-6_and_7-backport.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 0ee545cf..7f4b944e 100755
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -239,7 +239,7 @@ check_type_size(clock_t CLOCK_T)
- # Get the GCC version - from KDE4 cmake files
- if(CMAKE_COMPILER_IS_GNUCXX)
-   exec_program(${CMAKE_C_COMPILER} ARGS --version OUTPUT_VARIABLE _gcc_version_info)
--  string(REGEX MATCH "[345]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-+  string(REGEX MATCH "[34567]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-   # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the
-   # patch level, handle this here:
-   if (NOT _gcc_version)

diff --git a/sci-chemistry/openbabel/files/openbabel-2.4.1-gcc-8.patch b/sci-chemistry/openbabel/files/openbabel-2.4.1-gcc-8.patch
deleted file mode 100644
index a4aa3947f2e..00000000000
--- a/sci-chemistry/openbabel/files/openbabel-2.4.1-gcc-8.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-https://bugs.gentoo.org/654800
-Fixed-by: milan hodoscek
-diff --git a/../old/CMakeLists.txt b/CMakeLists.txt
-index dc38d1b..801207e 100644
---- a/../old/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -239,7 +239,7 @@ check_type_size(clock_t CLOCK_T)
- # Get the GCC version - from KDE4 cmake files
- if(CMAKE_COMPILER_IS_GNUCXX)
-   exec_program(${CMAKE_C_COMPILER} ARGS --version OUTPUT_VARIABLE _gcc_version_info)
--  string(REGEX MATCH "[34567]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-+  string(REGEX MATCH "[3456789]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-   # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the
-   # patch level, handle this here:
-   if (NOT _gcc_version)

diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
deleted file mode 100644
index db8203212fa..00000000000
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
+++ /dev/null
@@ -1,102 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-WX_GTK_VER="3.0"
-
-inherit cmake-utils desktop optfeature toolchain-funcs wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.org/wiki/Main_Page"
-SRC_URI="
-	mirror://sourceforge/openbabel/${P}.tar.gz
-	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
-"
-
-# See src/CMakeLists.txt for LIBRARY_VERSION
-SLOT="0/5.0.0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
-IUSE="doc openmp test wxwidgets"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-cpp/eigen:3
-	dev-libs/libxml2:2
-	sci-libs/inchi
-	sys-libs/zlib
-	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="
-	>=dev-util/cmake-2.4.8
-	doc? ( app-doc/doxygen )
-"
-
-DOCS=( AUTHORS NEWS.md README.md THANKS doc/dioxin.{inc,mol2} doc/README.{dioxin.pov,povray} )
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-2.3.2-gcc-6_and_7-backport.patch
-	"${FILESDIR}"/${P}-gcc-8.patch
-)
-
-pkg_setup() {
-	if use openmp; then
-		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
-			ewarn "OpenMP is not available in your current selected gcc"
-			die "need openmp capable gcc"
-		fi
-		FORTRAN_NEED_OPENMP=1
-	fi
-}
-
-src_prepare() {
-	sed \
-		-e '/__GNUC__/s:== 4:>= 4:g' \
-		-i include/openbabel/shared_ptr.h || die
-	cmake-utils_src_prepare
-}
-
-src_configure() {
-	use wxwidgets && setup-wxwidgets
-	local mycmakeargs=(
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DENABLE_OPENMP=$(usex openmp)
-		-DBUILD_GUI=$(usex wxwidgets)
-	)
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	docinto html
-	dodoc doc/{*.html,*.png}
-	if use doc ; then
-		docinto html/API
-		dodoc -r doc/API/html/*
-	fi
-
-	make_desktop_entry obgui "Open Babel" "${PN}"
-	doicon "${DISTDIR}/${PN}.png"
-
-	cmake-utils_src_install
-}
-
-src_test() {
-	local mycmakeargs=(
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DPYTHON_EXECUTABLE=false
-		-DOPENMP=$(usex openmp)
-		-DBUILD_GUI=$(usex wxwidgets)
-		-DTESTS=$(usex test)
-	)
-
-	cmake-utils_src_configure
-	cmake-utils_src_compile
-	cmake-utils_src_test -E py
-}
-
-pkg_postinst() {
-	optfeature "perl support" sci-chemistry/openbabel-perl
-	optfeature "python support" sci-chemistry/openbabel-python
-}