[gentoo-commits] proj/sci:master commit in: sci-biology/consed-bin/

[Justin Lecher]

commit:     2d9fd68feaefd3ed9dc864f5baf6bd3a63d90b7b
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 12:38:16 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 12:38:16 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2d9fd68f

Drop obsolete package  Sources unavailable

Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/consed-bin/ChangeLog            |  8 ---
 sci-biology/consed-bin/consed-bin-20.ebuild | 76 -----------------------------
 sci-biology/consed-bin/metadata.xml         |  9 ----
 3 files changed, 93 deletions(-)

diff --git a/sci-biology/consed-bin/ChangeLog b/sci-biology/consed-bin/ChangeLog
deleted file mode 100644
index 63ad66e..0000000
--- a/sci-biology/consed-bin/ChangeLog
+++ /dev/null
@@ -1,8 +0,0 @@
-# ChangeLog for sci-biology/consed-bin
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Id$
-
-  03 Mar 2013; Justin Lecher <jlec@g.o> consed-bin-20.ebuild,
-  metadata.xml:
-  Correct motif dep naming
-

diff --git a/sci-biology/consed-bin/consed-bin-20.ebuild b/sci-biology/consed-bin/consed-bin-20.ebuild
deleted file mode 100644
index bbd4d75..0000000
--- a/sci-biology/consed-bin/consed-bin-20.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-inherit toolchain-funcs
-
-DESCRIPTION="A genome sequence finishing program"
-HOMEPAGE="http://bozeman.mbt.washington.edu/consed/consed.html"
-SRC_URI="${P}-sources.tar.gz
-	${P}-linux.tar.gz"
-
-LICENSE="phrap"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=">=x11-libs/motif-2.3:0"
-RDEPEND="${DEPEND}
-	>=sci-biology/phred-000925
-	>=sci-biology/phrap-1.080721
-	dev-lang/perl"
-
-S="${WORKDIR}"
-
-RESTRICT="fetch"
-
-pkg_nofetch() {
-	einfo "Please visit ${HOMEPAGE} and obtain the file"
-	einfo "\"sources.tar.gz\", then rename it to \"${P}-sources.tar.gz\""
-	einfo "and place it in ${DISTDIR},"
-	einfo "obtain the file"
-	einfo "\"consed_linux.tar.gz\", then rename it to \"${P}-linux.tar.gz\""
-	einfo "and place it in ${DISTDIR}"
-}
-
-src_prepare() {
-	#sed -i '/#include/ s/<new.h>/<new>/' "${S}/main.cpp" || die
-	#sed -i \
-	#	-e '/CLIBS=/ s/$/ -lXm -lXt -lSM -lICE -lXext -lXmu -lXp -lm/' \
-	#	-e 's/ARCHIVES=/ARCHIVES=\n_ARCHIVES=/' \
-	#	-e 's/CFLGS=/CFLGS= ${CFLAGS} /' "${S}/makefile" || die
-	sed -i -e 's/CFLAGS=/CFLAGS += /' "${S}"/misc/*/Makefile || die
-	sed -i 's!\($szPhredParameterFile =\).*!\1 $ENV{PHRED_PARAMETER_FILE} || "'${EPREFIX}'/usr/share/phred/phredpar.dat";!' "${S}/scripts/"* || die
-}
-
-src_compile() {
-	#emake || die
-	emake -C misc/mktrace || die
-	emake -C misc/phd2fasta || die
-	(cd misc/454; $(tc-getCC) ${CFLAGS} sff2scf.c -o sff2scf) || die
-}
-
-src_install() {
-	dobin consed_linux32bit consed_linux32bit_dyn || die
-	dobin consed_linux64bit consed_linux64bit_static || die
-	# consed_linux_itanium
-
-	dobin misc/{mktrace/mktrace,phd2fasta/phd2fasta,454/sff2scf} || die
-	dobin scripts/* contributions/* || die
-	insinto /usr/lib/screenLibs
-	doins misc/*.{fa*,seq} || die
-	insinto /usr/share/${PN}/examples
-	doins -r standard polyphred autofinish assembly_view 454_newbler \
-		align454reads align454reads_answer solexa_example \
-		solexa_example_answer selectRegions selectRegionsAnswer || die
-	echo 'CONSED_HOME='${EPREFIX}'/usr' > ${S}"/99consed"
-	doenvd ${S}"/99consed" || die
-	dodoc README.txt *_announcement.txt || die
-}
-
-pkg_postinst() {
-	einfo "Package documentation is available at"
-	einfo "http://www.phrap.org/consed/distributions/README.${PV}.0.txt"
-}

diff --git a/sci-biology/consed-bin/metadata.xml b/sci-biology/consed-bin/metadata.xml
deleted file mode 100644
index fc7c769..0000000
--- a/sci-biology/consed-bin/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer>
-    <email>weaver@g.o</email>
-    <name>Andrey Kislyuk</name>
-  </maintainer>
-  <herd>sci-biology</herd>
-</pkgmetadata>