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commit: 4a9c779e4fe5ef995cb4f3a26a4cd0aed1e0789b |
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Author: Horea Christian <chr <AT> chymera <DOT> eu> |
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AuthorDate: Sun Sep 27 08:03:36 2020 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Sun Sep 27 08:03:36 2020 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4a9c779e |
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|
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sci-biology/oncotator: rm discontinued package, now part of sci-biology/gatk |
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|
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Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
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Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
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|
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sci-biology/oncotator/metadata.xml | 15 ----------- |
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sci-biology/oncotator/oncotator-1.9.2.0.ebuild | 36 -------------------------- |
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2 files changed, 51 deletions(-) |
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|
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diff --git a/sci-biology/oncotator/metadata.xml b/sci-biology/oncotator/metadata.xml |
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deleted file mode 100644 |
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index 7b9024751..000000000 |
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--- a/sci-biology/oncotator/metadata.xml |
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+++ /dev/null |
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@@ -1,15 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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- <upstream> |
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- <remote-id type="github">broadinstitute/oncotator</remote-id> |
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- </upstream> |
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-</pkgmetadata> |
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|
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diff --git a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild b/sci-biology/oncotator/oncotator-1.9.2.0.ebuild |
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deleted file mode 100644 |
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index 77f439b6d..000000000 |
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--- a/sci-biology/oncotator/oncotator-1.9.2.0.ebuild |
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+++ /dev/null |
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@@ -1,36 +0,0 @@ |
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-# Copyright 1999-2017 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=6 |
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- |
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-PYTHON_COMPAT=( python2_7 ) # no python3+, issue #364 |
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-inherit distutils-r1 |
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- |
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-DESCRIPTION="Annotate genetic variants in VCF" |
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-HOMEPAGE="https://github.com/broadinstitute/oncotator" |
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-SRC_URI="https://github.com/broadinstitute/oncotator/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
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- |
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-LICENSE="oncotator" |
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-SLOT="0" |
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-KEYWORDS="~amd64 ~x86" # breaks silently during install because of python syntax errors |
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-IUSE="" |
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- |
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-RESTRICT="fetch" |
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- |
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-DEPEND=" |
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- >=sci-biology/pysam-0.9.0 |
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- >=dev-python/bcbio-gff-0.6.2 |
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- >=dev-python/pyvcf-0.6.8 |
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- >=dev-python/pandas-0.18.0 |
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- >=sci-biology/biopython-1.66 |
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- >=dev-python/numpy-1.11.0 |
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- >=dev-python/cython-0.24 |
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- >=dev-python/shove-0.6.6 |
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- >=dev-python/sqlalchemy-1.0.12 |
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- >=dev-python/nose-1.3.7 |
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- >=dev-python/python-memcached-1.57 |
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- >=dev-python/natsort-4.0.4 |
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- >=dev-python/more-itertools-2.2 |
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- >=dev-python/enum34-1.1.2 |
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- dev-python/ngslib" |
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-RDEPEND="${DEPEND}" |
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