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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/paml: paml-4.2b.ebuild ChangeLog |
| Date: | Sat, 25 Apr 2009 23:08:35 |
| Message-Id: | E1Lxqz3-0008Gh-O0@stork.gentoo.org |
| 1 | weaver 09/04/25 23:08:33 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: paml-4.2b.ebuild |
| 5 | Log: |
| 6 | Version bump |
| 7 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
| 8 | |
| 9 | Revision Changes Path |
| 10 | 1.5 sci-biology/paml/ChangeLog |
| 11 | |
| 12 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.5&view=markup |
| 13 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.5&content-type=text/plain |
| 14 | diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/ChangeLog?r1=1.4&r2=1.5 |
| 15 | |
| 16 | Index: ChangeLog |
| 17 | =================================================================== |
| 18 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v |
| 19 | retrieving revision 1.4 |
| 20 | retrieving revision 1.5 |
| 21 | diff -u -r1.4 -r1.5 |
| 22 | --- ChangeLog 7 Sep 2008 12:02:02 -0000 1.4 |
| 23 | +++ ChangeLog 25 Apr 2009 23:08:33 -0000 1.5 |
| 24 | @@ -1,6 +1,11 @@ |
| 25 | # ChangeLog for sci-biology/paml |
| 26 | -# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 |
| 27 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.4 2008/09/07 12:02:02 markusle Exp $ |
| 28 | +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 29 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.5 2009/04/25 23:08:33 weaver Exp $ |
| 30 | + |
| 31 | +*paml-4.2b (25 Apr 2009) |
| 32 | + |
| 33 | + 25 Apr 2009; Andrey Kislyuk <weaver@g.o> +paml-4.2b.ebuild: |
| 34 | + Version bump |
| 35 | |
| 36 | *paml-4.1 (07 Sep 2008) |
| 37 | |
| 38 | |
| 39 | |
| 40 | |
| 41 | 1.1 sci-biology/paml/paml-4.2b.ebuild |
| 42 | |
| 43 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/paml-4.2b.ebuild?rev=1.1&view=markup |
| 44 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/paml/paml-4.2b.ebuild?rev=1.1&content-type=text/plain |
| 45 | |
| 46 | Index: paml-4.2b.ebuild |
| 47 | =================================================================== |
| 48 | # Copyright 1999-2009 Gentoo Foundation |
| 49 | # Distributed under the terms of the GNU General Public License v2 |
| 50 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.2b.ebuild,v 1.1 2009/04/25 23:08:33 weaver Exp $ |
| 51 | |
| 52 | inherit toolchain-funcs |
| 53 | |
| 54 | MY_P="${PN}42" |
| 55 | DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" |
| 56 | HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" |
| 57 | SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" |
| 58 | LICENSE="free-noncomm" |
| 59 | SLOT="0" |
| 60 | KEYWORDS="~x86 ~amd64" |
| 61 | IUSE="" |
| 62 | RDEPEND="" |
| 63 | DEPEND="${RDEPEND}" |
| 64 | S="${WORKDIR}/${MY_P}" |
| 65 | |
| 66 | src_compile() { |
| 67 | cd src |
| 68 | emake \ |
| 69 | -f Makefile.UNIX \ |
| 70 | CC="$(tc-getCC)" \ |
| 71 | CFLAGS="${CFLAGS}" \ |
| 72 | || die "make failed" |
| 73 | } |
| 74 | |
| 75 | src_install() { |
| 76 | pushd "${S}"/src |
| 77 | dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 |
| 78 | popd |
| 79 | dodoc README.txt doc/* |
| 80 | insinto /usr/share/${PN}/control |
| 81 | doins *.ctl || die "Failed to install control files" |
| 82 | insinto /usr/share/${PN}/dat |
| 83 | doins stewart* *.dat dat/* || die "Failed to install data files" |
| 84 | insinto /usr/share/${PN} |
| 85 | doins -r examples/ || die "Failed to install examples" |
| 86 | } |