Gentoo Archives: gentoo-commits

From: Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/LINKS/
Date: Sun, 17 Oct 2021 15:42:54
Message-Id: 1634485363.f4a311c42b306a1a49fa91c28203f388d324d326.mmokrejs@gentoo
1 commit: f4a311c42b306a1a49fa91c28203f388d324d326
2 Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
3 AuthorDate: Sun Oct 17 15:42:43 2021 +0000
4 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
5 CommitDate: Sun Oct 17 15:42:43 2021 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f4a311c4
7
8 sci-biology/LINKS: new package
9
10 The LINKS perl script probably needs some sed hackery to eventually
11 start using system-wide btl_bloomfilter file BloomFilter.i and also
12 perl's CORE/EXTERN.h.
13
14 Package-Manager: Portage-3.0.28, Repoman-3.0.3
15 Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
16
17 sci-biology/LINKS/LINKS-1.8.7.ebuild | 25 +++++++++++++++++++++++++
18 sci-biology/LINKS/metadata.xml | 12 ++++++++++++
19 2 files changed, 37 insertions(+)
20
21 diff --git a/sci-biology/LINKS/LINKS-1.8.7.ebuild b/sci-biology/LINKS/LINKS-1.8.7.ebuild
22 new file mode 100644
23 index 000000000..e9cf2fbd8
24 --- /dev/null
25 +++ b/sci-biology/LINKS/LINKS-1.8.7.ebuild
26 @@ -0,0 +1,25 @@
27 +# Copyright 1999-2021 Gentoo Authors
28 +# Distributed under the terms of the GNU General Public License v2
29 +
30 +EAPI=7
31 +
32 +DESCRIPTION="Scaffold genome assemblies by Chromium/PacBio/Nanopore reads"
33 +HOMEPAGE="https://github.com/bcgsc/LINKS"
34 +SRC_URI="https://github.com/bcgsc/LINKS/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
35 +
36 +LICENSE="GPL-3"
37 +SLOT="0"
38 +KEYWORDS="~amd64 ~x86"
39 +
40 +RESTRICT="test"
41 +
42 +RDEPEND="
43 + >=dev-lang/perl-1.6
44 + dev-lang/swig
45 + sci-biology/btl_bloomfilter
46 +"
47 +
48 +src_install(){
49 + dobin bin/LINKS *.pl tools/*.pl
50 + dodoc README.md
51 +}
52
53 diff --git a/sci-biology/LINKS/metadata.xml b/sci-biology/LINKS/metadata.xml
54 new file mode 100644
55 index 000000000..138cb7705
56 --- /dev/null
57 +++ b/sci-biology/LINKS/metadata.xml
58 @@ -0,0 +1,12 @@
59 +<?xml version="1.0" encoding="UTF-8"?>
60 +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
61 +<pkgmetadata>
62 + <maintainer type="person">
63 + <email>mmokrejs@×××××××××××××××.cz</email>
64 + <name>Martin Mokrejs</name>
65 + </maintainer>
66 + <maintainer type="project">
67 + <email>sci-biology@g.o</email>
68 + <name>Gentoo Biology Project</name>
69 + </maintainer>
70 +</pkgmetadata>