Gentoo Archives: gentoo-commits

From: Sergei Trofimovich <slyfox@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/abyss/
Date: Mon, 25 May 2020 10:56:32
Message-Id: 1590404152.caf207dd9d6bdc71885f9f459625856665972df1.slyfox@gentoo
1 commit: caf207dd9d6bdc71885f9f459625856665972df1
2 Author: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
3 AuthorDate: Mon May 25 10:55:52 2020 +0000
4 Commit: Sergei Trofimovich <slyfox <AT> gentoo <DOT> org>
5 CommitDate: Mon May 25 10:55:52 2020 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=caf207dd
7
8 sci-biology/abyss: disable CFLAGS QA check on samtobreak
9
10 GHC uses it's own native code generator. Portage's
11 QA check generates false positive because it assumes
12 presence of GCC-specific sections.
13
14 Workaround false positiove by disabling the check, bug #677600.
15
16 Bug: https://bugs.gentoo.org/677600
17 Package-Manager: Portage-2.3.100, Repoman-2.3.22
18 Signed-off-by: Sergei Trofimovich <slyfox <AT> gentoo.org>
19
20 sci-biology/abyss/abyss-2.0.3-r1.ebuild | 8 ++++++++
21 1 file changed, 8 insertions(+)
22
23 diff --git a/sci-biology/abyss/abyss-2.0.3-r1.ebuild b/sci-biology/abyss/abyss-2.0.3-r1.ebuild
24 index 6c8571fafa6..800a45964cd 100644
25 --- a/sci-biology/abyss/abyss-2.0.3-r1.ebuild
26 +++ b/sci-biology/abyss/abyss-2.0.3-r1.ebuild
27 @@ -29,6 +29,14 @@ DEPEND="${RDEPEND}
28
29 PATCHES=("${FILESDIR}"/${PN}-2.0.3-prog-AR.patch)
30
31 +# GHC uses it's own native code generator. Portage's
32 +# QA check generates false positive because it assumes
33 +# presence of GCC-specific sections.
34 +#
35 +# Workaround false positiove by disabling the check completely.
36 +# bug #677600
37 +QA_FLAGS_IGNORED='/usr/bin/abyss-samtobreak'
38 +
39 # todo: --enable-maxk=N configure option
40 # todo: fix automagic mpi toggling