From: | "Jeffrey Gardner (je_fro)" <je_fro@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/seaview: ChangeLog seaview-4.2.12.ebuild |
Date: | Tue, 01 Feb 2011 02:53:37 |
Message-Id: | 20110201025326.AAC7420057@flycatcher.gentoo.org |
1 | je_fro 11/02/01 02:53:26 |
2 | |
3 | Modified: ChangeLog |
4 | Added: seaview-4.2.12.ebuild |
5 | Log: |
6 | Adding latest version. |
7 | |
8 | (Portage version: 2.1.9.35/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.37 sci-biology/seaview/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/ChangeLog?rev=1.37&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/ChangeLog?rev=1.37&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/ChangeLog?r1=1.36&r2=1.37 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v |
20 | retrieving revision 1.36 |
21 | retrieving revision 1.37 |
22 | diff -u -r1.36 -r1.37 |
23 | --- ChangeLog 16 Jul 2010 22:05:28 -0000 1.36 |
24 | +++ ChangeLog 1 Feb 2011 02:53:26 -0000 1.37 |
25 | @@ -1,6 +1,11 @@ |
26 | # ChangeLog for sci-biology/seaview |
27 | -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.36 2010/07/16 22:05:28 hwoarang Exp $ |
29 | +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
30 | +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.37 2011/02/01 02:53:26 je_fro Exp $ |
31 | + |
32 | +*seaview-4.2.12 (01 Feb 2011) |
33 | + |
34 | + 01 Feb 2011; Jeff Gardner <je_fro@g.o> +seaview-4.2.12.ebuild: |
35 | + Adding latest version. |
36 | |
37 | 16 Jul 2010; Markos Chandras <hwoarang@g.o> seaview-4.2.5.ebuild: |
38 | Stable on amd64 wrt bug #328429 |
39 | |
40 | |
41 | |
42 | 1.1 sci-biology/seaview/seaview-4.2.12.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/seaview-4.2.12.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/seaview/seaview-4.2.12.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: seaview-4.2.12.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2011 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-4.2.12.ebuild,v 1.1 2011/02/01 02:53:26 je_fro Exp $ |
52 | |
53 | EAPI="2" |
54 | |
55 | inherit toolchain-funcs multilib eutils base |
56 | |
57 | DESCRIPTION="A graphical multiple sequence alignment editor" |
58 | HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" |
59 | SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz" |
60 | |
61 | LICENSE="public-domain" |
62 | SLOT="0" |
63 | KEYWORDS="~amd64 ~x86" |
64 | IUSE="+pdf +xft" |
65 | |
66 | DEPEND="x11-libs/fltk:1.1 |
67 | pdf? ( media-libs/pdflib ) |
68 | xft? ( x11-libs/libXft |
69 | x11-libs/fltk:1.1[xft] )" |
70 | RDEPEND="${DEPEND} |
71 | sci-biology/clustalw |
72 | || ( sci-libs/libmuscle sci-biology/muscle ) |
73 | sci-biology/phyml" |
74 | |
75 | S="${WORKDIR}/${PN}" |
76 | |
77 | src_prepare() { |
78 | # respect CXXFLAGS (package uses them as CFLAGS) |
79 | sed -i \ |
80 | -e "s:^CXX.*:CXX = $(tc-getCXX):" \ |
81 | -e "s:\$(OPT):${CXXFLAGS}:" \ |
82 | -e "s:^OPT:#OPT:" \ |
83 | -e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cxxflags):" \ |
84 | -e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \ |
85 | -e "s:^USE_XFT:#USE_XFT:" \ |
86 | -e "s:^#HELPFILE:HELPFILE:" \ |
87 | -e "s:^#PHYMLNAME:PHYMLNAME:" \ |
88 | Makefile || die "sed failed while editing Makefile" |
89 | |
90 | if use pdf; then |
91 | sed -i \ |
92 | -e "s:PDF_PS_FLAGS = -DNO_PDF:#PDF_PS_FLAGS = -DNO_PDF:" \ |
93 | -e "s:PDF_PS = postscript:#PDF_PS = postscript:" \ |
94 | -e "s:#PDF_INC = \$(HOME)/PDFlibLite:PDF_INC = /usr/include:" \ |
95 | -e "s:#PDF_LIB = \$(HOME)/PDFlibLite:PDF_LIB = /usr/lib:" \ |
96 | -e "s:#PDF_PS = pdf:PDF_PS = pdf:" \ |
97 | -e "s:#PDF_PS_FLAGS = -I\$(PDF_INC):PDF_PS_FLAGS = -I\$(PDF_INC):" \ |
98 | -e "s:#LPDF = -L\$(PDF_LIB) -lpdf:LPDF = -L\$(PDF_LIB) -lpdf:" \ |
99 | Makefile || die "sed failed while editing Makefile to enable pdf output" |
100 | fi |
101 | |
102 | if use xft; then |
103 | sed -i \ |
104 | -e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(xft-config --cflags):" \ |
105 | -e "s:-lXft:$(xft-config --libs):" \ |
106 | Makefile || die "sed failed while editing Makefile to enable xft" |
107 | else |
108 | sed -i -e "s:-lXft::" Makefile || die |
109 | fi |
110 | base_src_prepare |
111 | } |
112 | |
113 | src_install() { |
114 | dobin seaview || die |
115 | |
116 | # /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile |
117 | insinto /usr/share/seaview |
118 | doins example.nxs seaview.html |
119 | |
120 | insinto /usr/share/seaview/images |
121 | doins seaview.xpm || die |
122 | |
123 | make_desktop_entry seaview Seaview |
124 | |
125 | doman seaview.1 || die |
126 | } |