From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: ChangeLog refmac-5.6.0097.ebuild |
Date: | Tue, 04 Jan 2011 08:55:30 |
Message-Id: | 20110104085521.42EC92005C@flycatcher.gentoo.org |
1 | jlec 11/01/04 08:55:21 |
2 | |
3 | Modified: ChangeLog |
4 | Added: refmac-5.6.0097.ebuild |
5 | Log: |
6 | Version Bump |
7 | |
8 | (Portage version: 2.2.0_alpha12/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.32 sci-chemistry/refmac/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.32&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.32&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?r1=1.31&r2=1.32 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v |
20 | retrieving revision 1.31 |
21 | retrieving revision 1.32 |
22 | diff -u -r1.31 -r1.32 |
23 | --- ChangeLog 31 Dec 2010 16:08:51 -0000 1.31 |
24 | +++ ChangeLog 4 Jan 2011 08:55:21 -0000 1.32 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for sci-chemistry/refmac |
27 | -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.31 2010/12/31 16:08:51 jlec Exp $ |
29 | +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
30 | +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.32 2011/01/04 08:55:21 jlec Exp $ |
31 | + |
32 | +*refmac-5.6.0097 (04 Jan 2011) |
33 | + |
34 | + 04 Jan 2011; Justin Lecher <jlec@g.o> |
35 | + +files/5.6.0097-allow-dynamic-linking.patch, +refmac-5.6.0097.ebuild: |
36 | + Version Bump |
37 | |
38 | 31 Dec 2010; Justin Lecher <jlec@g.o> refmac-5.5.0110-r2.ebuild: |
39 | Depend correct ccp4-libs version to make test work |
40 | |
41 | |
42 | |
43 | 1.1 sci-chemistry/refmac/refmac-5.6.0097.ebuild |
44 | |
45 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0097.ebuild?rev=1.1&view=markup |
46 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0097.ebuild?rev=1.1&content-type=text/plain |
47 | |
48 | Index: refmac-5.6.0097.ebuild |
49 | =================================================================== |
50 | # Copyright 1999-2011 Gentoo Foundation |
51 | # Distributed under the terms of the GNU General Public License v2 |
52 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0097.ebuild,v 1.1 2011/01/04 08:55:21 jlec Exp $ |
53 | |
54 | EAPI="2" |
55 | |
56 | inherit base toolchain-funcs versionator |
57 | |
58 | MY_PV="$(get_version_component_range 1-2)_source_v${PV}" |
59 | |
60 | DESCRIPTION="Macromolecular crystallographic refinement program" |
61 | HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/" |
62 | SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz |
63 | test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" |
64 | |
65 | SLOT="0" |
66 | LICENSE="ccp4" |
67 | KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
68 | IUSE="test" |
69 | |
70 | RDEPEND=" |
71 | sci-libs/ccp4-libs |
72 | sci-libs/mmdb |
73 | >sci-libs/monomer-db-1 |
74 | virtual/blas |
75 | virtual/lapack" |
76 | DEPEND="${RDEPEND}" |
77 | |
78 | S="${WORKDIR}" |
79 | |
80 | PATCHES=( |
81 | "${FILESDIR}"/${PV}-allow-dynamic-linking.patch |
82 | ) |
83 | |
84 | src_prepare() { |
85 | base_src_prepare |
86 | use test && epatch "${FILESDIR}"/5.5-test.log.patch |
87 | } |
88 | |
89 | src_compile() { |
90 | emake \ |
91 | FC=$(tc-getFC) \ |
92 | CC=$(tc-getCC) \ |
93 | CXX=$(tc-getCXX) \ |
94 | COPTIM="${CFLAGS}" \ |
95 | FOPTIM="${FFLAGS:- -O2}" \ |
96 | VERSION="" \ |
97 | XFFLAGS="-fno-second-underscore" \ |
98 | LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ |
99 | LLIBLAPACK="$(pkg-config --libs lapack blas)" \ |
100 | || die |
101 | } |
102 | |
103 | src_test() { |
104 | einfo "Starting tests ..." |
105 | export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" |
106 | export CCP4_TEST="${WORKDIR}"/test-framework |
107 | export CCP4_SCR="${T}" |
108 | ln -sf refmac "${S}"/refmac5 |
109 | sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb |
110 | ccp4-run-thorough-tests -v test_refmac5 || die |
111 | } |
112 | |
113 | src_install() { |
114 | for i in refmac libcheck FreeTwin header2matr; do |
115 | exeinto /usr/libexec/ccp4/bin/ |
116 | doexe ${i} || die |
117 | dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} |
118 | done |
119 | dosym refmac /usr/bin/refmac5 || die |
120 | } |