[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-blast+/

[Martin Mokrejs]

commit:     94213c11a5931dfd22ce57afdd7a12b9a40fa402
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr 28 17:58:08 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr 28 17:58:08 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=94213c11

sci-biology/ncbi-blast+: version bump

Package-Manager: Portage-2.3.5, Repoman-2.3.2

 .../{ncbi-blast+-2.3.0.ebuild => ncbi-blast+-2.6.0.ebuild}        | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.3.0.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
similarity index 98%
rename from sci-biology/ncbi-blast+/ncbi-blast+-2.3.0.ebuild
rename to sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
index 7791cf3e5..6adbefad3 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.3.0.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -239,7 +239,9 @@ src_configure() {
 	$(use_with mesa mesa "${EPREFIX}/usr")
 	$(use_with opengl glut "${EPREFIX}/usr")
 	$(use_with opengl glew "${EPREFIX}/usr")
-	$(use_with opengl glew-mx)
+	#
+	# GLEW 2.0 dropped support for this, see https://bugs.gentoo.org/show_bug.cgi?id=611302
+	# $(use_with opengl glew-mx)
 	$(use_with wxwidgets wxwidgets "${EPREFIX}/usr")
 	$(use_with wxwidgets wxwidgets-ucs)
 	$(use_with freetype freetype "${EPREFIX}/usr")
@@ -264,6 +266,8 @@ src_configure() {
 	$(use_with curl curl "${EPREFIX}/usr")
 #	$(use_with X x "${EPREFIX}/usr")
 #	$(use_with X x) # there is no --with-x option
+	# prevent downloading VDB sources from https://github.com/ncbi/ncbi-vdb.git during configure execution
+	--without-vdb
 	)
 
 	# http://www.ncbi.nlm.nih.gov/books/NBK7167/