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weaver 10/05/05 07:14:47 |
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|
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Modified: ChangeLog |
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Added: velvet-0.7.62.ebuild |
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Log: |
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Version bump |
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(Portage version: 2.2_rc67/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.10 sci-biology/velvet/ChangeLog |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.10&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?rev=1.10&content-type=text/plain |
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diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/ChangeLog?r1=1.9&r2=1.10 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v |
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retrieving revision 1.9 |
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retrieving revision 1.10 |
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diff -u -r1.9 -r1.10 |
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--- ChangeLog 31 Oct 2009 17:57:32 -0000 1.9 |
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+++ ChangeLog 5 May 2010 07:14:47 -0000 1.10 |
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@@ -1,6 +1,11 @@ |
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# ChangeLog for sci-biology/velvet |
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-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.9 2009/10/31 17:57:32 maekke Exp $ |
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+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/ChangeLog,v 1.10 2010/05/05 07:14:47 weaver Exp $ |
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+ |
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+*velvet-0.7.62 (05 May 2010) |
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+ |
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+ 05 May 2010; Andrey Kislyuk <weaver@g.o> +velvet-0.7.62.ebuild: |
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+ Version bump |
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|
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31 Oct 2009; Markus Meier <maekke@g.o> velvet-0.7.55.ebuild: |
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amd64/x86 stable, bug #290936 |
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|
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|
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|
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1.1 sci-biology/velvet/velvet-0.7.62.ebuild |
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|
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file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: velvet-0.7.62.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/velvet/velvet-0.7.62.ebuild,v 1.1 2010/05/05 07:14:47 weaver Exp $ |
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|
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EAPI="2" |
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|
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MY_P="${PN}_${PV}" |
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|
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DESCRIPTION="A sequence assembler for very short reads" |
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HOMEPAGE="http://www.ebi.ac.uk/~zerbino/velvet/" |
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SRC_URI="http://www.ebi.ac.uk/~zerbino/velvet/${MY_P}.tgz" |
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|
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LICENSE="GPL-2" |
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SLOT="0" |
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IUSE="-doc" |
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KEYWORDS="~amd64 ~x86" |
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|
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DEPEND="doc? ( virtual/latex-base )" |
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RDEPEND="" |
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|
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S="${WORKDIR}/${MY_P}" |
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|
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src_prepare() { |
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rm -rf "${S}"/third-party/zlib* |
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sed -i -e '/\(CFLAGS\|LDFLAGS\|Z_LIB_DIR\|Z_LIB_FILES\) *= */d' \ |
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-e '1 a CFLAGS+= -Wall' -e '1 a LDFLAGS+= -lm -lz' \ |
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-e '/default :/ s/zlib//' -e '/color :/ s/zlib//' \ |
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-e '/obj:/ s/zlib//' -e '/obj_de:/ s/zlib//' \ |
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"${S}"/Makefile || die |
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use doc || sed -i -e '/default :/ s/doc//' "${S}"/Makefile || die |
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sed -i -e '/zlib.h/d' -e '1 i #include <zlib.h>' "${S}"/src/readSet.c || die |
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} |
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|
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src_compile() { |
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MAKE_XOPTS="" |
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if [[ $VELVET_MAXKMERLENGTH != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS MAXKMERLENGTH=$VELVET_MAXKMERLENGTH"; fi |
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if [[ $VELVET_CATEGORIES != "" ]]; then MAKE_XOPTS="$MAKE_XOPTS CATEGORIES=$VELVET_CATEGORIES"; fi |
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emake -j1 $MAKE_XOPTS || die |
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emake -j1 $MAKE_XOPTS color || die |
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} |
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|
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src_install() { |
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dobin velvet{g,h,g_de,h_de} || die |
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insinto /usr/share/${PN} |
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doins -r contrib || die |
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dodoc Manual.pdf CREDITS.txt |
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} |
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|
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pkg_postinst() { |
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elog "To adjust the MAXKMERLENGTH or CATEGORIES parameters as described in the manual," |
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elog "please set the variables VELVET_MAXKMERLENGTH or VELVET_CATEGORIES in your" |
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elog "environment or /etc/make.conf, then re-emerge the package. For example:" |
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elog " VELVET_MAXKMERLENGTH=NN emerge [options] velvet" |
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} |
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