Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/
Date: Mon, 27 Feb 2017 20:58:17
Message-Id: 1488229007.7528fce17b53eae7fadb405a538dae7d86e0c51d.jlec@gentoo
1 commit: 7528fce17b53eae7fadb405a538dae7d86e0c51d
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Mon Feb 27 20:56:47 2017 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Mon Feb 27 20:56:47 2017 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7528fce1
7
8 sci-biology/rebase: Version Bump
9
10 Package-Manager: Portage-2.3.3, Repoman-2.3.1
11 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
12
13 sci-biology/rebase/Manifest | 1 +
14 sci-biology/rebase/rebase-1703.ebuild | 46 +++++++++++++++++++++++++++++++++++
15 2 files changed, 47 insertions(+)
16
17 diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
18 index 78e5ed5667..25a0097b75 100644
19 --- a/sci-biology/rebase/Manifest
20 +++ b/sci-biology/rebase/Manifest
21 @@ -1,2 +1,3 @@
22 DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
23 DIST rebase-1702.tar.xz 117583312 SHA256 f010388af45a58c9f40270240c65fd5a82a1fce27b1f1eb0d1fbe4b3ffd20966 SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f WHIRLPOOL 70aeede45b1795fc8cc634675381d4458b32445016139d17ac5b9951cf2ff54bbc0fa50d91bf49bbed19d250553275e3c1b15cf0de5149e36d3e1567c74031ec
24 +DIST rebase-1703.tar.xz 122252304 SHA256 dbd5fa2751b693b1babcef9c69a6f7a9e539550aeea712c569dcc0f9a93998e3 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796 WHIRLPOOL b42693781f5faa8a2dbd15204d8f1fc2dc08fb233fa536bd3c0405799059b830c8be214d34f54e2645c8c20e7bd1359882167d175a5026a8acbea29b4f00208c
25
26 diff --git a/sci-biology/rebase/rebase-1703.ebuild b/sci-biology/rebase/rebase-1703.ebuild
27 new file mode 100644
28 index 0000000000..f241beaf07
29 --- /dev/null
30 +++ b/sci-biology/rebase/rebase-1703.ebuild
31 @@ -0,0 +1,46 @@
32 +# Copyright 1999-2017 Gentoo Foundation
33 +# Distributed under the terms of the GNU General Public License v2
34 +# $Id$
35 +
36 +EAPI=6
37 +
38 +MY_PV=${PV#1}
39 +
40 +DESCRIPTION="A restriction enzyme database"
41 +HOMEPAGE="http://rebase.neb.com"
42 +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
43 +
44 +SLOT="0"
45 +LICENSE="public-domain"
46 +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
47 +IUSE="emboss minimal"
48 +
49 +RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
50 +DEPEND="${RDEPEND}"
51 +
52 +RESTRICT="binchecks strip"
53 +
54 +src_compile() {
55 + if use emboss; then
56 + echo; einfo "Indexing Rebase for usage with EMBOSS."
57 + mkdir REBASE || die
58 + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
59 + -protofile proto.${MY_PV} -equivalences \
60 + || die "Indexing Rebase failed."
61 + echo
62 + fi
63 +}
64 +
65 +src_install() {
66 + if ! use minimal; then
67 + insinto /usr/share/${PN}
68 + doins withrefm.${MY_PV} proto.${MY_PV}
69 + fi
70 + newdoc REBASE.DOC README
71 + if use emboss; then
72 + insinto /usr/share/EMBOSS/data/REBASE
73 + doins REBASE/embossre.{enz,ref,sup}
74 + insinto /usr/share/EMBOSS/data
75 + doins REBASE/embossre.equ
76 + fi
77 +}