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commit: 52a2dc47e0cc577e1385da939e54bad3fd6eae8c |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Thu Apr 28 00:22:29 2011 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Thu Apr 28 00:22:29 2011 +0000 |
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URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=52a2dc47 |
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|
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sci-biology/consed-20-r1: added nLine.h patch from upstream to fix negative line numbers in phd files wrapped in phd.ball.1 |
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|
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(Portage version: 2.1.9.43/git/Linux i686, unsigned Manifest commit) |
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|
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--- |
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.../{consed-20.ebuild => consed-20-r1.ebuild} | 1 + |
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sci-biology/consed/files/nLine.h.patch | 17 +++++++++++++++++ |
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2 files changed, 18 insertions(+), 0 deletions(-) |
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|
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diff --git a/sci-biology/consed/consed-20.ebuild b/sci-biology/consed/consed-20-r1.ebuild |
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similarity index 98% |
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rename from sci-biology/consed/consed-20.ebuild |
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rename to sci-biology/consed/consed-20-r1.ebuild |
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index 02673db..6cd983f 100644 |
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--- a/sci-biology/consed/consed-20.ebuild |
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+++ b/sci-biology/consed/consed-20-r1.ebuild |
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@@ -44,6 +44,7 @@ src_prepare() { |
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sed -i -e 's/CFLAGS=/CFLAGS += /' "${S}"/misc/*/Makefile || die |
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sed -i 's!\($szPhredParameterFile =\).*!\1 $ENV{PHRED_PARAMETER_FILE} || "'${EPREFIX}'/usr/share/phred/phredpar.dat";!' "${S}/scripts/"* || die |
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epatch "${FILESDIR}"/nextPhredPipeline.cpp.patch || die |
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+ epatch "${FILESDIR}"/nLine.h.patch || die |
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} |
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|
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src_compile() { |
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|
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diff --git a/sci-biology/consed/files/nLine.h.patch b/sci-biology/consed/files/nLine.h.patch |
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new file mode 100644 |
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index 0000000..9b6779e |
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--- /dev/null |
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+++ b/sci-biology/consed/files/nLine.h.patch |
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@@ -0,0 +1,17 @@ |
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+--- nLine.h.ori 2011-04-28 02:12:58.000000000 +0200 |
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++++ nLine.h 2011-04-28 02:13:43.000000000 +0200 |
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+@@ -44,11 +44,11 @@ |
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+ |
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+ #ifdef DEFINE_nLine |
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+ |
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+-int nLine; |
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++long nLine; |
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+ |
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+ #else |
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+ |
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+-extern int nLine; |
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++extern long nLine; |
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+ |
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+ #endif |
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+ |
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+ |
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