[gentoo-commits] gentoo-x86 commit in sci-biology/repeatmasker: repeatmasker-3.2.9.ebuild ChangeLog

[Andrey Kislyuk (weaver)]

weaver      11/02/03 01:34:28

  Modified:             ChangeLog
  Added:                repeatmasker-3.2.9.ebuild
  Log:
  Version bump, switch over to sci-biology/rmblast
  
  (Portage version: 2.2_rc86/cvs/Linux x86_64)

Revision  Changes    Path
1.5                  sci-biology/repeatmasker/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/repeatmasker/ChangeLog?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/repeatmasker/ChangeLog?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/repeatmasker/ChangeLog?r1=1.4&r2=1.5

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog	20 Aug 2009 13:41:10 -0000	1.4
+++ ChangeLog	3 Feb 2011 01:34:28 -0000	1.5
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/repeatmasker
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.4 2009/08/20 13:41:10 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.5 2011/02/03 01:34:28 weaver Exp $
+
+*repeatmasker-3.2.9 (03 Feb 2011)
+
+  03 Feb 2011; Andrey Kislyuk <weaver@g.o>
+  +repeatmasker-3.2.9.ebuild:
+  Version bump, switch over to sci-biology/rmblast
 
 *repeatmasker-3.2.8 (20 Aug 2009)
 



1.1                  sci-biology/repeatmasker/repeatmasker-3.2.9.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.9.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.9.ebuild?rev=1.1&content-type=text/plain

Index: repeatmasker-3.2.9.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.9.ebuild,v 1.1 2011/02/03 01:34:28 weaver Exp $

EAPI="2"

MY_PV=${PV//\./-}

DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
HOMEPAGE="http://repeatmasker.org/"
SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"

LICENSE="OSL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

DEPEND=""
RDEPEND="sci-biology/rmblast
	sci-biology/trf
	>=sci-biology/repeatmasker-libraries-20090604"

S="${WORKDIR}/RepeatMasker"

src_configure() {
	sed -i -e 's/system( "clear" );//' \
		-e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die
	echo "
env
/usr/share/${PN}
/usr/bin
2
/opt/rmblast/bin
Y
5" | "${S}/configure" || die "configure failed"
	sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \
		-e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \
		-e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \
		"${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
}

src_install() {
	exeinto /usr/share/${PN}
	for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
		doexe $i || die
		dosym /usr/share/${PN}/$i /usr/bin/$i || die
	done

	dodir /usr/share/${PN}/lib
	insinto /usr/share/${PN}/lib
	doins "${S}"/*.pm || die

	insinto /usr/share/${PN}
	doins -r util Matrices Libraries taxonomy.dat *.help || die
	keepdir /usr/share/${PN}/Libraries

	dodoc README INSTALL *.help
}