[gentoo-commits] proj/sci:master commit in: sci-biology/stampy-bin/

[Andrew Ammerlaan]

commit:     141d595a554e77413db8b484a734ee2100d51cb5
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Feb  1 04:54:12 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Feb  1 04:54:12 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=141d595a

sci-biology/stampy-bin: drop pack, py2 only

documentation says it needs py2.6 or py2.7

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/stampy-bin/metadata.xml             | 12 -------
 sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild | 43 -------------------------
 2 files changed, 55 deletions(-)

diff --git a/sci-biology/stampy-bin/metadata.xml b/sci-biology/stampy-bin/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/stampy-bin/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@×××××××××××××××.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@g.o</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-</pkgmetadata>

diff --git a/sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild b/sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild
deleted file mode 100644
index 6d3034304..000000000
--- a/sci-biology/stampy-bin/stampy-bin-1.0.28.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-PYTHON_COMPAT=( python2_7 )
-
-inherit toolchain-funcs python-r1 python-utils-r1
-
-DESCRIPTION="Map highly divergent short reads to a reference"
-HOMEPAGE="http://www.well.ox.ac.uk/project-stampy"
-SRC_URI="stampy-${PV}.tar.gz"
-
-LICENSE="stampy-academic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RESTRICT="fetch"
-
-DEPEND="${PYTHON_DEPS}"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/stampy-${PV}
-
-# FIXME: the makefile calls python but fails if that is under python-3.4, 2.7 works
-# FIXME: respect CC and CXX
-
-src_prepare(){
-	sed -e 's/-O2 -Wall/$(CFLAGS)/' -i makefile || die
-}
-
-src_install(){
-	dobin *.py
-	python_foreach_impl python_domodule maptools.so
-	python_moduleinto Stampy
-	python_foreach_impl python_domodule build/python2.7/Stampy/*.pyc # only *.pyc files available
-	python_moduleinto ext
-	python_foreach_impl python_domodule build/python2.7/ext/*.pyc # only *.pyc files available
-	python_moduleinto plugins
-	python_foreach_impl python_domodule build/python2.7/plugins/*.py*
-	dodoc README.txt
-}